PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.1_#_520

Common Name

COCSUDRAFT_39327

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

MYB

Protein Properties

Length: 2275aa MW: 235391 Da PI: 6.6647

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.1_#_520	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.7	6.3e-09	1080	1123	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E++l+v++v+++G + + +I r+mg+ Rt +ks++ k fgenesh1_pg.1_#_520 1080 SWSQAEEKLFVEGVQLYGLD-FPAIRRHMGQSRTIGAVKSFFSKN 1123 7***************99.******************9876 PP
2	Myb_DNA-binding	36.7	9.5e-12	1577	1619	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+ E +++a k++G + W++ ++ ++ +tl q+k+++q+y+ fgenesh1_pg.1_#_520 1577 WTEKEKVAFIEAYKMHGRN-WARLSEAVP-SKTLTQIKNYYQNYK 1619 ***************66.*****.************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.64E-11	880	940	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-4	886	938	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.065	891	942	IPR017884	SANT domain
SMART	SM00717	9.8E-4	892	940	IPR001005	SANT/Myb domain
CDD	cd00167	9.11E-4	895	937	No hit	No description
PROSITE profile	PS51293	9.994	1076	1128	IPR017884	SANT domain
SMART	SM00717	1.6E-7	1077	1126	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.2E-7	1079	1130	IPR009057	Homeodomain-like
Pfam	PF00249	2.7E-6	1080	1122	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.39E-12	1571	1623	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.68	1572	1623	IPR017884	SANT domain
SMART	SM00717	1.5E-10	1573	1621	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-8	1575	1618	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-9	1577	1619	IPR001005	SANT/Myb domain
CDD	cd00167	2.22E-8	1577	1619	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2275 aa Download sequence Send to blast
MPQERGEAPP GGPYRPERFG KKREWPGPPN GFERDHGPPP FSGVGGSGYP PGMEPRGRGS 60 PTQGDVRGSF DRGALPPPPP PARNDRASGW DSWGPSSREG GGWRGGASRL PPPPMRRQHS 120 SGREAPDFEA GELAGPGEPP LSRSGWDQKP GLASGGAREG RYGGGISRTA SLPLGGRMSA 180 PEAMPLAPDL PGPPPLLRSV SHPAARPVSP LHSSANRPLP NGSSSFEAHW PMAEEQHTRS 240 SNFPVAYTPL PHHLVSQPSH SLPPGIMSRR TDLPLPPAPP LLASPVLPDL AMPAADGGAP 300 SPALLRPAEA ASVGGVTPAR QLPEADYEAG ELSTPAGSVA GDANATPVSD DPPKRKRLGW 360 GQGLARLRSV DKRGLPADDH SEHSPRDSEA SRHTDAGAHD SSALNSPSFS ARTDDAAPAA 420 ALSPVVPGPD AAAAAATAVA AFTEEPAGSA LPPPPALLMV EPAVVIEAAA EVATPAPPPS 480 PLQPAALTPI RGPEEAPAAA AAPLASTPQS PKDRPTIFTP SPEARAPVVS PSLPPQLPPS 540 VSAEPSPLKQ EAIAAHEGES PIPEPVKAAG QQGAEQKPSK EVIMRKIDTA DSEIEALERQ 600 MAELSTALDA DVAAARDLAE EVTHLETARP METQPSEEES SIAQSTQGQL EAAMDVDVAE 660 KPTAVLHPLT KKAKALKRAR AGGVARITPP KLPSLATGEM SEGDRHLLRL PRRWQVEAVV 720 KTNHERAAEA RSVFLPLLHP DMLEDSLRGV MYGLVEEAPA YHHNLRTHQR LFDALLEHVR 780 RRRSALRRKE AALGRQYLAL YEQWRCHFTG KSGVRKDRPG MSLARAASGR KTARSDYEQA 840 QIMLQLQAVE RMKEMVHVPP QVLCPYERAA RRFVCRNARV EDPVELLKQE RQLRPWTPEE 900 KRIFNEKFLV HPKDFRRIAM HLDIRTTGDC VMHYYRIQKL DEFAAVRRKQ QLKKRRQQSE 960 VNRSITYLGI GGAAAAAKRG DPLAPHHAVV HADQLTSRGS KGPRGGGRGG RGGGRGSRLG 1020 GNTAAAAAAA AAAAAAAANI AAEAMAEVGA TRGDEDWTPA DEGGALDVGK KLGRGGESSS 1080 WSQAEEKLFV EGVQLYGLDF PAIRRHMGQS RTIGAVKSFF SKNRRRLDLD RLADDAAAKM 1140 EADEMANADL QHLAAPLARR PPSRSATPAA DARMPPPADI ALRSAEAAAA AAAAAAAAVV 1200 HAQDGPGFAA AGDAEMADAA DMLSSLQALS AAGGHPLSAP PLGPPLPLGV GPPGFGGLQP 1260 PFAPQVLQHL AAQGMGDVGG MHGPFPPNIP PQLAGLMQAQ AHAQAQQQQQ PNPVQALHFM 1320 QQMGLPPHVL HMLVHQMAAA GGPPGMGAHP PPGGLPPGLN PTLLMPGVMP GLHPLNLNLQ 1380 NYALFQALQG AGGMAPMSAA MHSVVPERQL PGQLPGQLPL GSGGFQAAAD ERAFHFQQQQ 1440 LQQQMGVQQQ MGVQQQLDNL QAMAEFKEAQ MKSTRPLSPP DAAGMEGLGL DPSQEARWRY 1500 DNGLHARMDV DPHQGPPQGG PGPPGPPPPF LVGGPPPRGE ALIMKKSASA DSLPVFCAAP 1560 VDEVAESVVA KRQMSLWTEK EKVAFIEAYK MHGRNWARLS EAVPSKTLTQ IKNYYQNYKV 1620 KLGLDRMELP ISAVQPISRK RSRTDAADSP AVSGTPSVPP PSTAAAAGSG AAPADLATAA 1680 LERLQVQQPE RPFSTPPGAS LEAVAAAADA ARDKSQSAPP PGLYSGQLPP AAPAFSDLER 1740 GPSPGARAAA AAEVAEAVDG QQLLPAAAAR QAAAKSMPHQ GLLPLIAREN VRPGHGGSLG 1800 GARMQQQLFS TGGGSSLAAR LGVAGSMSSS LPTPSPAGSP APSQRPEGVR ARASLPREAL 1860 AASDDLSDRM ARFLQHRRAG PPSSLPEAPA ITTFSPRVSA ASPPLLSGDL AIGIGVSAGH 1920 VSTPALLEVL RSIGQAGPAS PQQLIPPALP LANASPPPPQ PWPPSTEAVK AMLAAATAAA 1980 SATADAHRPS VADSAPGPGP GAAGQPSPAD APKQPLAADA RNEEPSPLGI GSLDQAGGRL 2040 QPDELFGQAA AAAAAMESDV PTMSAAEGPP QGSPQGAGQP VVQQADAAVS PAVVSDSAAV 2100 VPRQPAAQTP LQPQPAAAEL TSSSTAGPEV SMEAVAEHEA ASAAQVENAH ELYVAEQPTA 2160 DVQSPSRVQN GSVLAAPAEE AAAPDPAEGV APDLAASGRG IALADAPDAH AAPAPGQAAE 2220 TAQVAAPEKA SRAVVDAPAS SPELAGHAAE PLQPAVMAAM GAGDAAAVTL SDNQ*

Sequence ? help Back to Top

Protein Sequence Length: 2275 aa Download sequence Send to blast

MPQERGEAPP GGPYRPERFG KKREWPGPPN GFERDHGPPP FSGVGGSGYP PGMEPRGRGS  60
PTQGDVRGSF DRGALPPPPP PARNDRASGW DSWGPSSREG GGWRGGASRL PPPPMRRQHS  120
SGREAPDFEA GELAGPGEPP LSRSGWDQKP GLASGGAREG RYGGGISRTA SLPLGGRMSA  180
PEAMPLAPDL PGPPPLLRSV SHPAARPVSP LHSSANRPLP NGSSSFEAHW PMAEEQHTRS  240
SNFPVAYTPL PHHLVSQPSH SLPPGIMSRR TDLPLPPAPP LLASPVLPDL AMPAADGGAP  300
SPALLRPAEA ASVGGVTPAR QLPEADYEAG ELSTPAGSVA GDANATPVSD DPPKRKRLGW  360
GQGLARLRSV DKRGLPADDH SEHSPRDSEA SRHTDAGAHD SSALNSPSFS ARTDDAAPAA  420
ALSPVVPGPD AAAAAATAVA AFTEEPAGSA LPPPPALLMV EPAVVIEAAA EVATPAPPPS  480
PLQPAALTPI RGPEEAPAAA AAPLASTPQS PKDRPTIFTP SPEARAPVVS PSLPPQLPPS  540
VSAEPSPLKQ EAIAAHEGES PIPEPVKAAG QQGAEQKPSK EVIMRKIDTA DSEIEALERQ  600
MAELSTALDA DVAAARDLAE EVTHLETARP METQPSEEES SIAQSTQGQL EAAMDVDVAE  660
KPTAVLHPLT KKAKALKRAR AGGVARITPP KLPSLATGEM SEGDRHLLRL PRRWQVEAVV  720
KTNHERAAEA RSVFLPLLHP DMLEDSLRGV MYGLVEEAPA YHHNLRTHQR LFDALLEHVR  780
RRRSALRRKE AALGRQYLAL YEQWRCHFTG KSGVRKDRPG MSLARAASGR KTARSDYEQA  840
QIMLQLQAVE RMKEMVHVPP QVLCPYERAA RRFVCRNARV EDPVELLKQE RQLRPWTPEE  900
KRIFNEKFLV HPKDFRRIAM HLDIRTTGDC VMHYYRIQKL DEFAAVRRKQ QLKKRRQQSE  960
VNRSITYLGI GGAAAAAKRG DPLAPHHAVV HADQLTSRGS KGPRGGGRGG RGGGRGSRLG  1020
GNTAAAAAAA AAAAAAAANI AAEAMAEVGA TRGDEDWTPA DEGGALDVGK KLGRGGESSS  1080
WSQAEEKLFV EGVQLYGLDF PAIRRHMGQS RTIGAVKSFF SKNRRRLDLD RLADDAAAKM  1140
EADEMANADL QHLAAPLARR PPSRSATPAA DARMPPPADI ALRSAEAAAA AAAAAAAAVV  1200
HAQDGPGFAA AGDAEMADAA DMLSSLQALS AAGGHPLSAP PLGPPLPLGV GPPGFGGLQP  1260
PFAPQVLQHL AAQGMGDVGG MHGPFPPNIP PQLAGLMQAQ AHAQAQQQQQ PNPVQALHFM  1320
QQMGLPPHVL HMLVHQMAAA GGPPGMGAHP PPGGLPPGLN PTLLMPGVMP GLHPLNLNLQ  1380
NYALFQALQG AGGMAPMSAA MHSVVPERQL PGQLPGQLPL GSGGFQAAAD ERAFHFQQQQ  1440
LQQQMGVQQQ MGVQQQLDNL QAMAEFKEAQ MKSTRPLSPP DAAGMEGLGL DPSQEARWRY  1500
DNGLHARMDV DPHQGPPQGG PGPPGPPPPF LVGGPPPRGE ALIMKKSASA DSLPVFCAAP  1560
VDEVAESVVA KRQMSLWTEK EKVAFIEAYK MHGRNWARLS EAVPSKTLTQ IKNYYQNYKV  1620
KLGLDRMELP ISAVQPISRK RSRTDAADSP AVSGTPSVPP PSTAAAAGSG AAPADLATAA  1680
LERLQVQQPE RPFSTPPGAS LEAVAAAADA ARDKSQSAPP PGLYSGQLPP AAPAFSDLER  1740
GPSPGARAAA AAEVAEAVDG QQLLPAAAAR QAAAKSMPHQ GLLPLIAREN VRPGHGGSLG  1800
GARMQQQLFS TGGGSSLAAR LGVAGSMSSS LPTPSPAGSP APSQRPEGVR ARASLPREAL  1860
AASDDLSDRM ARFLQHRRAG PPSSLPEAPA ITTFSPRVSA ASPPLLSGDL AIGIGVSAGH  1920
VSTPALLEVL RSIGQAGPAS PQQLIPPALP LANASPPPPQ PWPPSTEAVK AMLAAATAAA  1980
SATADAHRPS VADSAPGPGP GAAGQPSPAD APKQPLAADA RNEEPSPLGI GSLDQAGGRL  2040
QPDELFGQAA AAAAAMESDV PTMSAAEGPP QGSPQGAGQP VVQQADAAVS PAVVSDSAAV  2100
VPRQPAAQTP LQPQPAAAEL TSSSTAGPEV SMEAVAEHEA ASAAQVENAH ELYVAEQPTA  2160
DVQSPSRVQN GSVLAAPAEE AAAPDPAEGV APDLAASGRG IALADAPDAH AAPAPGQAAE  2220
TAQVAAPEKA SRAVVDAPAS SPELAGHAAE PLQPAVMAAM GAGDAAAVTL SDNQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1005	1013	GGRGGRGGG
2	1007	1015	RGGRGGGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005652288.1	0.0	hypothetical protein COCSUDRAFT_39327
TrEMBL	I0ZAS5	0.0	I0ZAS5_COCSC; Uncharacterized protein
STRING	XP_005652288.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2883	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	8e-18	MYB family protein

Link Out ? help Back to Top
Entrez Gene	17045759

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]