PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.19_#_53

Common Name

COCSUDRAFT_44671

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

MYB

Protein Properties

Length: 532aa MW: 55765.2 Da PI: 6.6295

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.19_#_53	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.9	5.3e-14	12	61	3	47
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47 W +eEd +l ++ +lGg +W+++a+++g gRt+k+c++rw++ fgenesh1_pg.19_#_53 12 TWKPEEDRRLQKVMSELGGTsgtgfSWSAVAKRLGGGRTGKSCRLRWFNQ 61 6**********************************************996 PP
2	Myb_DNA-binding	44.5	3.6e-14	68	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqky 47 r +++ +Ed++ ++a++++G+ W++Ia+ g +gRt++ +k+rw++ fgenesh1_pg.19_#_53 68 REPFSSQEDQIVIQAHAKYGNQ-WALIAKLDGlEGRTDNAIKNRWNST 114 789***************99.********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.608	5	62	IPR017930	Myb domain
SMART	SM00717	8.9E-9	9	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-13	12	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-18	12	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.38E-22	12	116	IPR009057	Homeodomain-like
CDD	cd00167	2.05E-7	12	60	No hit	No description
PROSITE profile	PS51294	23.434	63	119	IPR017930	Myb domain
SMART	SM00717	9.0E-15	67	117	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-12	68	114	IPR001005	SANT/Myb domain
CDD	cd00167	5.65E-10	70	115	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.3E-21	70	119	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MFEETAECKG TTWKPEEDRR LQKVMSELGG TSGTGFSWSA VAKRLGGGRT GKSCRLRWFN 60 QLCPTLKREP FSSQEDQIVI QAHAKYGNQW ALIAKLDGLE GRTDNAIKNR WNSTLKRKLA 120 LGEISGPTGK KQLRSSDSDS DGPSPKRARS APGSGSPKRG RSGTNSAKSS PSRASAPAFM 180 AQPLADIDSN PFLAAQHFAR GSSLDSPSCS MSSGSNGSPV THKHAVDEAF LDPLGSPISV 240 LEAFKSFRED IDVLSLDSVS EEVLADADFL FDLSDDDLMS DIGPIPAHPA AQQPLELPCF 300 SAGRGDGRAA AAVIAAASYR MPDTPRSPFE DALELSQQQR SFSGFASSGS CALPDLEALA 360 AAAAATQPQR TAESIGSPMA TAASSLPAAF CLGDEAVSSV RLEDFNSSSS AASAISHIAA 420 ARARAAAAAA AQLPASPAVA ALEAAASSLA DNLQTCLARF GSPRSPLPRS WSSSPKEDVN 480 IMPRDSLAEI MAADQVMAAK NHLTSVASLS ARATSFESSR SFNKGIWNKV W*

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MFEETAECKG TTWKPEEDRR LQKVMSELGG TSGTGFSWSA VAKRLGGGRT GKSCRLRWFN  60
QLCPTLKREP FSSQEDQIVI QAHAKYGNQW ALIAKLDGLE GRTDNAIKNR WNSTLKRKLA  120
LGEISGPTGK KQLRSSDSDS DGPSPKRARS APGSGSPKRG RSGTNSAKSS PSRASAPAFM  180
AQPLADIDSN PFLAAQHFAR GSSLDSPSCS MSSGSNGSPV THKHAVDEAF LDPLGSPISV  240
LEAFKSFRED IDVLSLDSVS EEVLADADFL FDLSDDDLMS DIGPIPAHPA AQQPLELPCF  300
SAGRGDGRAA AAVIAAASYR MPDTPRSPFE DALELSQQQR SFSGFASSGS CALPDLEALA  360
AAAAATQPQR TAESIGSPMA TAASSLPAAF CLGDEAVSSV RLEDFNSSSS AASAISHIAA  420
ARARAAAAAA AQLPASPAVA ALEAAASSLA DNLQTCLARF GSPRSPLPRS WSSSPKEDVN  480
IMPRDSLAEI MAADQVMAAK NHLTSVASLS ARATSFESSR SFNKGIWNKV W*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	1e-28	13	119	7	105	C-Myb DNA-Binding Domain
1msf_C	1e-28	13	119	7	105	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005643860.1	0.0	hypothetical protein COCSUDRAFT_44671
TrEMBL	I0YLP7	0.0	I0YLP7_COCSC; Uncharacterized protein
STRING	XP_005643860.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	4e-32	myb domain protein 109

Link Out ? help Back to Top
Entrez Gene	17037256

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]