PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

fgenesh1_pg.12_#_119

Common Name

COCSUDRAFT_43180

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

C3H

Protein Properties

Length: 479aa MW: 52170.8 Da PI: 6.8598

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
fgenesh1_pg.12_#_119	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.8e-07	144	167	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC+ f+ +G C G++C+F H+ fgenesh1_pg.12_#_119 144 KLQLCK-FHINGRCAKGASCPFLHV 167 5579.9999***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.5E-5	142	168	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.159	142	169	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-6	143	166	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-4	143	166	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-4	144	167	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MQVFFDLEES GGGQGVEILI KAGPVFTEEQ VHDLRDTLKL GDVVKASGQL EHAGSHILHL 60 TSIVVLERWR DTNPKRHFIP RCLSHGSETA SPGMRPETQL AAAESTQAAE EASQTAHPTH 120 DQGDDGIALQ HNDEAQLIGT QPSKLQLCKF HINGRCAKGA SCPFLHVDVH AAPRVRQAWI 180 ADRRQHRHRM AAQAGDPHAG GAQRKRQRAA IFAQWLLDTY GRDALNQGSG TPASCGTRPL 240 WHSHKRTCVL DIAGGSGSLS FCLQTVHGVR CTTIDPRPAK LSKDAHRHLA RIRAEAAAEA 300 AGSFRSLLDA DAACESLWGC LEEDASSAAD DLSKLHLSNG ILELSSRSDL AQDSLEGTLP 360 DHVEAEFNEE LWDGGHAARL QASSLVIGLH PDQARFSFAT DSIVEFAVKH DKAFAVVPCC 420 VFPRLFKHRR LKGTSPVTLY AELVEYLRQL GGDGSQLDHL KFEGMNKVVF RMQGPFLL*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MQVFFDLEES GGGQGVEILI KAGPVFTEEQ VHDLRDTLKL GDVVKASGQL EHAGSHILHL  60
TSIVVLERWR DTNPKRHFIP RCLSHGSETA SPGMRPETQL AAAESTQAAE EASQTAHPTH  120
DQGDDGIALQ HNDEAQLIGT QPSKLQLCKF HINGRCAKGA SCPFLHVDVH AAPRVRQAWI  180
ADRRQHRHRM AAQAGDPHAG GAQRKRQRAA IFAQWLLDTY GRDALNQGSG TPASCGTRPL  240
WHSHKRTCVL DIAGGSGSLS FCLQTVHGVR CTTIDPRPAK LSKDAHRHLA RIRAEAAAEA  300
AGSFRSLLDA DAACESLWGC LEEDASSAAD DLSKLHLSNG ILELSSRSDL AQDSLEGTLP  360
DHVEAEFNEE LWDGGHAARL QASSLVIGLH PDQARFSFAT DSIVEFAVKH DKAFAVVPCC  420
VFPRLFKHRR LKGTSPVTLY AELVEYLRQL GGDGSQLDHL KFEGMNKVVF RMQGPFLL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005645997.1	0.0	hypothetical protein COCSUDRAFT_43180
TrEMBL	I0YST4	0.0	I0YST4_COCSC; Uncharacterized protein
STRING	XP_005645997.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP348	8	11

Link Out ? help Back to Top
Entrez Gene	17039437

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]