PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID fgenesh1_pg.11_#_43
Common NameCOCSUDRAFT_42835
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family E2F/DP
Protein Properties Length: 669aa    MW: 71073.1 Da    PI: 8.5859
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
fgenesh1_pg.11_#_43genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP47.52.9e-15248310671
              E2F_TDP   6 Lrlltqkflklleksee..givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          L ll++kf + +   ++    + lne+a eL    v   rRR+YDi+NVLea+++++++ k +++w+g
  fgenesh1_pg.11_#_43 248 LMLLCEKFQARFGGPQAapSLILLNEAAIEL---AV--PRRRLYDIINVLEAVEIVTRTGKLAYEWRG 310
                          8999***9999988554479***********...99..****************************98 PP
2E2F_TDP35.61.5e-11370447469
              E2F_TDP   4 ksLrlltqkflkllekseegivtlnevakeLvse..........dvknkrRRiYDilNVLealnliek....kekneirw 69 
                          +sL++l++kf++ll + ++g v l e+a +L+            +  +  RR+YDi  +L++++liek    k++++++w
  fgenesh1_pg.11_#_43 370 HSLWMLSRKFVRLLLT-TQGPVPLAEAAVALIGAdvaaarraqaQ-ITVERRLYDIGSILSSVGLIEKtylgKRQPAFSW 447
                          69***********996.779***********9989******9953.4789******************998888899988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.6E-13243310IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.3E-16246312IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-9247311IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.3E-13248310IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM013725.6E-6367449IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.5E-10369448IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.2E-11370447IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MANDFSIPGD DILENSSQVP TRKRSMRPRC PRTLLEETYY VSPLDGQSMD EGDLSDESAE  60
DEEAAALLLE MGHFLDSAVD ARALSPAAQP AKAGGRKQGA SISFRCTSCH QPAVLRGEKR  120
PTFFCASCPS KGGAQKRAQR ALHGSSGRLI SVAEATELLA ARSGGIAPPK QQAQQQRVCP  180
PIFQGMGPER ERCMERLPSV PVQNRAADPD WVPSQLARAC SEGGEANQGR CKCGKRISAA  240
HPPCKSELML LCEKFQARFG GPQAAPSLIL LNEAAIELAV PRRRLYDIIN VLEAVEIVTR  300
TGKLAYEWRG LKHLPQLLDR LVADQLAGLP VEDRLRRTAA PAKNAAAAGS SEEGSGGDEA  360
APKERMPPTH SLWMLSRKFV RLLLTTQGPV PLAEAAVALI GADVAAARRA QAQITVERRL  420
YDIGSILSSV GLIEKTYLGK RQPAFSWRWP WRSSKPEVGA APASLKLPGS NGDSAHANSN  480
TSCGTLIDAS NTAPQGQNAA DDAQCLTPSS ATRAGDNAKR AWAAAVGGDP SAKRAKIEPA  540
PQPQPPFGAT RLCAAVTEHM AGHMLAHPLP QPMSLPGFAW GQGIPMPAVS MPPPGVSMPL  600
HLLAASYLPF PTSHADMAAM WNDPHFAAAL RSTAYLHLPM PSDARPPAAL PFPLPSQLSL  660
SAIGASQR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005646332.10.0hypothetical protein COCSUDRAFT_42835
TrEMBLI0YTR90.0I0YTR9_COCSC; Uncharacterized protein
STRINGXP_005646332.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.12e-15DP-E2F-like protein 3
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]