PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | fgenesh1_kg.24_#_12_#_3604_1_CBOZ_CBPA | ||||||||
Common Name | COCSUDRAFT_34541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | bZIP | ||||||||
Protein Properties | Length: 171aa MW: 18869 Da PI: 10.4253 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.7 | 3.9e-11 | 89 | 147 | 3 | 61 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 el+ +rr+ kNR A +sR+RK+ e++ L v +Lea N+ L++ l + + e +l+ fgenesh1_kg.24_#_12_#_3604_1_CBOZ_CBPA 89 ELRLQRRLVKNRRTAAASRERKQRELDDLHVNVRALEADNQGLRQALRQRESELRSLRV 147 899*****************************************999999988888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.9E-10 | 84 | 148 | No hit | No description |
SMART | SM00338 | 1.1E-5 | 87 | 151 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-9 | 88 | 146 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.071 | 89 | 152 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.69E-7 | 91 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MQPSNDGSGS RTCHTQAQER CQQAPRRHYP PAAAFREGTG PDRCRGSGDA SSQEAAEGTE 60 VSDSESPKRR RGKRKLPEVD YSAIEDPAEL RLQRRLVKNR RTAAASRERK QRELDDLHVN 120 VRALEADNQG LRQALRQRES ELRSLRVHMA SIQGSAPLPT PAPLLPGFPA * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 73 | PKRRRGKR |
2 | 68 | 74 | RRRGKRK |
3 | 68 | 75 | RRRGKRKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005642894.1 | 1e-119 | hypothetical protein COCSUDRAFT_34541 | ||||
TrEMBL | I0YIY1 | 1e-118 | I0YIY1_COCSC; Uncharacterized protein | ||||
STRING | XP_005642894.1 | 1e-119 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5773 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56850.1 | 7e-06 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 17036375 |
Publications ? help Back to Top | |||
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