PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pm.C_50143 | ||||||||
Common Name | COCSUDRAFT_53049 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | NF-YB | ||||||||
Protein Properties | Length: 149aa MW: 16517.8 Da PI: 4.681 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 65.2 | 1.3e-20 | 2 | 94 | 4 | 96 |
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 +d lP a v +i+k++lP++ +++ ++ +++ +c efi +v sea+ +++ekr tin++ ++ al +lGf +e ++v+lk estExt_fgenesh1_pm.C_50143 2 EDVSLPRATVEKIVKEILPKDIRLATNTLDLLLDCCGEFIQLVYSEANTVSEEEKRSTINPEHVVRALDSLGFSSLLEDVNVFLK 86 5789********************************************************************************* PP NF-YB 89 kyrelege 96 + ++++++ estExt_fgenesh1_pm.C_50143 87 EVKDTDQK 94 99998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.27E-30 | 2 | 132 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.7E-34 | 2 | 130 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.2E-14 | 5 | 69 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MEDVSLPRAT VEKIVKEILP KDIRLATNTL DLLLDCCGEF IQLVYSEANT VSEEEKRSTI 60 NPEHVVRALD SLGFSSLLED VNVFLKEVKD TDQKRSLKRH DSKAAEQNKM SEEEQIALQK 120 KLFAEARART LSCALPDAAV NSEMPGTA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 1e-27 | 2 | 127 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005649265.1 | 1e-104 | DR1-like protein | ||||
TrEMBL | I0Z252 | 1e-103 | I0Z252_COCSC; DR1-like protein | ||||
STRING | XP_005649265.1 | 1e-104 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2422 | 15 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.4 | 1e-35 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Entrez Gene | 17042722 |
Publications ? help Back to Top | |||
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