PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pm.C_190072 | ||||||||
Common Name | COCSUDRAFT_54678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | G2-like | ||||||||
Protein Properties | Length: 125aa MW: 13276.6 Da PI: 10.2946 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 23.5 | 1.2e-07 | 6 | 22 | 39 | 55 |
G2-like 39 kgLtlehvkSHLQkYRl 55 gLt+++v+SHLQkYR estExt_fgenesh1_pm.C_190072 6 AGLTRQNVASHLQKYRK 22 69**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-6 | 6 | 23 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MGPIAAGLTR QNVASHLQKY RKRHTAQSDF CKAAAYCPPA AYPCWSPFAT PYMMGGHACA 60 LPHAPWATVA SMIPTSQPQA QPSESINAII ADVLKKPKGK PPIGLKLDTG KVMEAVSKGL 120 HLRK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005643953.1 | 2e-87 | hypothetical protein COCSUDRAFT_54678 | ||||
TrEMBL | I0YLZ0 | 4e-86 | I0YLZ0_COCSC; Uncharacterized protein | ||||
STRING | XP_005643953.1 | 6e-87 | (Coccomyxa subellipsoidea) |
Link Out ? help Back to Top | |
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Entrez Gene | 17037349 |
Publications ? help Back to Top | |||
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