PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pm.C_170068
Common NameCOCSUDRAFT_54523
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bZIP
Protein Properties Length: 78aa    MW: 8816.99 Da    PI: 9.1178
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pm.C_170068genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.75.8e-14752146
                                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                       bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
                                 +++ k++ rk+kNR +A +sR+R++a+++ Lee+v++L++e + L 
  estExt_fgenesh1_pm.C_170068  7 DRDAKKQLRKEKNRASAAASRARREAYTASLEEEVAKLKEEKSWLE 52
                                 5899*************************************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.9E-13556No hitNo description
SMARTSM003385.7E-6774IPR004827Basic-leucine zipper domain
PfamPF001702.2E-11852IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.588956IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-111158No hitNo description
PROSITE patternPS0003601529IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MEDHMEDRDA KKQLRKEKNR ASAAASRARR EAYTASLEEE VAKLKEEKSW LEGQVNSPDH  60
AMPMSLPARA PMRHLSL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005644568.12e-48hypothetical protein COCSUDRAFT_54523
TrEMBLI0YNQ54e-47I0YNQ5_COCSC; Uncharacterized protein
STRINGXP_005644568.17e-48(Coccomyxa subellipsoidea)
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]