PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pm.C_10273 | ||||||||
Common Name | COCSUDRAFT_52243 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | NF-YC | ||||||||
Protein Properties | Length: 236aa MW: 24616.6 Da PI: 4.6365 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 44.9 | 2.5e-14 | 7 | 84 | 20 | 96 |
NF-YC 20 elPl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 + Pl arikki++adedv +i+ +Pvll +a elf+ +l + a++++ rtl + ++a v + ++ dfl ++ estExt_fgenesh1_pm.C_10273 7 NHPLsARIKKIMQADEDVGKIAQATPVLLGRAVELFLKQLCDGAVAIANSKDARTLSAAHLKAYVMSDTTMDFLKQTM 84 556636********************************************************************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.5E-21 | 12 | 71 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-14 | 12 | 69 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 5.24E-16 | 12 | 87 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MKGKKLNHPL SARIKKIMQA DEDVGKIAQA TPVLLGRAVE LFLKQLCDGA VAIANSKDAR 60 TLSAAHLKAY VMSDTTMDFL KQTMASAPDI AAEDEEPAPK PKRRRKTAEE GPGSPKPGRG 120 RGKKAAAKQE DFEEAEMDLR EAAAANAEDA PAGVKPEDVS TAEVHNPEGH ASREEPAAAV 180 PPKQEDIEAG GDPASGTESA QPVQPALAAA PLLPIGIPAA AAATIAEEDD YDDFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 2e-15 | 12 | 71 | 15 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005652243.1 | 1e-166 | hypothetical protein COCSUDRAFT_52243 | ||||
TrEMBL | I0ZAN0 | 1e-165 | I0ZAN0_COCSC; Uncharacterized protein | ||||
STRING | XP_005652243.1 | 1e-166 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3343 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 6e-20 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Entrez Gene | 17045858 |
Publications ? help Back to Top | |||
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