PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pm.C_10186
Common NameCOCSUDRAFT_52190
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family NF-YC
Protein Properties Length: 141aa    MW: 15198 Da    PI: 4.6638
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pm.C_10186genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC591e-1816961898
                       NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                                 + lPl rikk++k + dvk ++a+a    ++a e++i  ++ r++  +   +r t+   d+a++v++    +fl divp+
  estExt_fgenesh1_pm.C_10186 16 AEVLPLNRIKKLMKEEADVKAVAADASYAAARATEFLIEAMAARAFQVTLAENRDTISYGDVATSVSQWAATEFLRDIVPQ 96
                                6789***************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-201996IPR009072Histone-fold
PfamPF008081.9E-121980IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.26E-151995IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MATHDFQEAE TSHAPAEVLP LNRIKKLMKE EADVKAVAAD ASYAAARATE FLIEAMAARA  60
FQVTLAENRD TISYGDVATS VSQWAATEFL RDIVPQRVPL SEIIKRLRTS NEQSQAAGNG  120
EVIDGKDEVM HTPNGGIVQS *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005652065.12e-99hypothetical protein COCSUDRAFT_52190
TrEMBLI0ZA524e-98I0ZA52_COCSC; Uncharacterized protein
STRINGXP_005652065.17e-99(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1085933
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]