PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pm.C_10186 | ||||||||
Common Name | COCSUDRAFT_52190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | NF-YC | ||||||||
Protein Properties | Length: 141aa MW: 15198 Da PI: 4.6638 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 59 | 1e-18 | 16 | 96 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 + lPl rikk++k + dvk ++a+a ++a e++i ++ r++ + +r t+ d+a++v++ +fl divp+ estExt_fgenesh1_pm.C_10186 16 AEVLPLNRIKKLMKEEADVKAVAADASYAAARATEFLIEAMAARAFQVTLAENRDTISYGDVATSVSQWAATEFLRDIVPQ 96 6789***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-20 | 19 | 96 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-12 | 19 | 80 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 2.26E-15 | 19 | 95 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MATHDFQEAE TSHAPAEVLP LNRIKKLMKE EADVKAVAAD ASYAAARATE FLIEAMAARA 60 FQVTLAENRD TISYGDVATS VSQWAATEFL RDIVPQRVPL SEIIKRLRTS NEQSQAAGNG 120 EVIDGKDEVM HTPNGGIVQS * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005652065.1 | 2e-99 | hypothetical protein COCSUDRAFT_52190 | ||||
TrEMBL | I0ZA52 | 4e-98 | I0ZA52_COCSC; Uncharacterized protein | ||||
STRING | XP_005652065.1 | 7e-99 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP10859 | 3 | 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 17045536 |
Publications ? help Back to Top | |||
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