PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pg.C_50254

Common Name

COCSUDRAFT_46926

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

Nin-like

Protein Properties

Length: 780aa MW: 84219.2 Da PI: 5.7661

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pg.C_50254	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.2	1.5e-18	380	419	13	52
RWP-RK 13 yFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +F +++AA +L +c+T+LKr+CR++GI RWP+R++++l estExt_fgenesh1_pg.C_50254 380 QFGVGLREAAANLRICPTTLKRACRRHGITRWPRRQLAKL 419 68999********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.775	351	439	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-15	381	419	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence Send to blast
MSAGQTIVSW DMRYPAAFTY NPQNSRESAS QHAQLNMKLA QVVVKFTSSL SSTGTGTLSQ 60 IWLPSISEDG SVVLGTQGVP FSVSGTVDLL ALFRCISCRF KFTTDVTDPS NMGVVGRVFA 120 SGEPEFSHNV QTYSKSVYLR VSDAQRCRVH STMLLPMYMD PQRDHPFAVF EVCQTEKNVL 180 FPSLVDLFQR CLEDVNLYTV DIEKHSMGIG LRCWPSSLDY TGKDSASVAT FAPEAAACTD 240 METLCSADSL QRLKAASVNG ATDVHGEEVL RASSGVGGGK SEGMARLVSV GNRLELDLEP 300 LLMTSKGGGG GGGGNCGLES GTQGSEALGS RRPPMRLEVG LPAAAAALLN GFDGDKARLK 360 GQLSSFGLQY AAVPPRDMAQ FGVGLREAAA NLRICPTTLK RACRRHGITR WPRRQLAKLN 420 RSEGSKSDGS GDLPNIKVEG SYRSAARLSG QQPAVSSAAS PRTSAQLGAE RREGVTTRSF 480 SAATSAGRPA APSGSSPGIF SPLDFPPDMQ QQPFYLSGNP SSTGILDLFQ SIGPSGSAGM 540 DDLEALQERD PEFYNYLKQT DSGLLDFKED DSDEEEAGGT SESIQDGEEE ERGNERLPVI 600 ESGAAEEQLE DQEILTPKTL DAWCLEATQH ASLRAMRKLL KVFRVACHYG DSEAEVHETL 660 RATSSSVFNK LLIFMLKEAD GIFRNLLDLP DDAAILSSSF KKTKSGMLVF ILRKLRTSIP 720 FMGYFQRLQR KYMRQAISIF STNEAAPRVQ ALVFVRQMAV MLPEPAMDQA VKVSANAII*

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence Send to blast

MSAGQTIVSW DMRYPAAFTY NPQNSRESAS QHAQLNMKLA QVVVKFTSSL SSTGTGTLSQ  60
IWLPSISEDG SVVLGTQGVP FSVSGTVDLL ALFRCISCRF KFTTDVTDPS NMGVVGRVFA  120
SGEPEFSHNV QTYSKSVYLR VSDAQRCRVH STMLLPMYMD PQRDHPFAVF EVCQTEKNVL  180
FPSLVDLFQR CLEDVNLYTV DIEKHSMGIG LRCWPSSLDY TGKDSASVAT FAPEAAACTD  240
METLCSADSL QRLKAASVNG ATDVHGEEVL RASSGVGGGK SEGMARLVSV GNRLELDLEP  300
LLMTSKGGGG GGGGNCGLES GTQGSEALGS RRPPMRLEVG LPAAAAALLN GFDGDKARLK  360
GQLSSFGLQY AAVPPRDMAQ FGVGLREAAA NLRICPTTLK RACRRHGITR WPRRQLAKLN  420
RSEGSKSDGS GDLPNIKVEG SYRSAARLSG QQPAVSSAAS PRTSAQLGAE RREGVTTRSF  480
SAATSAGRPA APSGSSPGIF SPLDFPPDMQ QQPFYLSGNP SSTGILDLFQ SIGPSGSAGM  540
DDLEALQERD PEFYNYLKQT DSGLLDFKED DSDEEEAGGT SESIQDGEEE ERGNERLPVI  600
ESGAAEEQLE DQEILTPKTL DAWCLEATQH ASLRAMRKLL KVFRVACHYG DSEAEVHETL  660
RATSSSVFNK LLIFMLKEAD GIFRNLLDLP DDAAILSSSF KKTKSGMLVF ILRKLRTSIP  720
FMGYFQRLQR KYMRQAISIF STNEAAPRVQ ALVFVRQMAV MLPEPAMDQA VKVSANAII*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649288.1	0.0	hypothetical protein COCSUDRAFT_46926
TrEMBL	I0Z275	0.0	I0Z275_COCSC; Uncharacterized protein
STRING	XP_005649288.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3760	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	6e-15	Nin-like family protein

Link Out ? help Back to Top
Entrez Gene	17042745

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]