PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pg.C_50239

Common Name

COCSUDRAFT_46919

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

MYB

Protein Properties

Length: 943aa MW: 99103.7 Da PI: 10.2139

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pg.C_50239	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.6	2.9e-13	64	107	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g WTteEd +l+++v ++G g+W++ +++ gR +kq+++rw+ estExt_fgenesh1_pg.C_50239 64 KGGWTTEEDAKLKELVDKYGEGSWSKLVPHFQ-GRIGKQLRERWN 107 688***************************.*********8 PP
2	Myb_DNA-binding	40.7	5.4e-13	116	158	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g+WT+eE+ lv ++ + + W+ Ia++++ gRt + +k++w+ estExt_fgenesh1_pg.C_50239 116 KGSWTEEEEAMLVVQHRIYRNA-WADIAKMLP-GRTCNAVKNHWN 158 799*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.489	59	110	IPR017930	Myb domain
SMART	SM00717	2.0E-12	63	112	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.99E-25	63	157	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.1E-22	66	119	IPR009057	Homeodomain-like
Pfam	PF13921	1.0E-11	67	127	No hit	No description
CDD	cd00167	4.63E-11	67	110	No hit	No description
PROSITE profile	PS51294	21.222	111	165	IPR017930	Myb domain
SMART	SM00717	1.4E-13	115	163	IPR001005	SANT/Myb domain
CDD	cd00167	1.46E-10	118	161	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-16	120	163	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MPVNAAMPPL PDAEPSRSAS PHNPEPGTPK RDRSPPNSPD SSLKLSGLTK SGRRRRQHPV 60 AEIKGGWTTE EDAKLKELVD KYGEGSWSKL VPHFQGRIGK QLRERWNHEL RPDILKGSWT 120 EEEEAMLVVQ HRIYRNAWAD IAKMLPGRTC NAVKNHWNAT LRRVNRGSER PLQGPVERYM 180 QELGLIESRA KRGTVHRTHN FQVQSSRSIS ATPSSRPEVT SKARWVPVPP PSMKIAPTAR 240 NPGSSVQAES TPAMVSEEGQ GQSRPATPRL EAATPTQPPP GLVPPAASTA MSAPQPAEAM 300 HLHPSTIAMK WGHTDMEIAG IPESAAEYWK MLQDDPKEGA IKMDQDRESK KVQGSGDGTA 360 EEAEPSVAAV GAAQDDEHKP SSNGKSGKRQ RTAPQDSVYH FFQRSSSPQA APQQKGPVME 420 EAAMALLLLD GSTAPAVTLH IQLTISTQNT HLLGTSGEGG EAEELPRLRP HRSRSVHAAD 480 FSYNEDEETC LPPAAKLPKV ARRTRTGMPG AREGMRQVAD ACTQTAPPPA TPAGARPWGA 540 ARSGTAEEQK QMQGQAAMYG VNAAVATARS SGATGGRPVP FATTVNVRDR LAGFIVSLAT 600 VADRWEMRPS ADKDRFRQGL GRSTDSKVVA LRQAVLEKCV AVKGPSPGQA VHAMAALLAE 660 MAPIINAAFE AASDSQLGTK PNPLAAFSQM QPPVSAGTNF GATAGHRLAP GSAPPVPLSS 720 SAAQLLPQAV GPPRAPPVTM STAPPNTAAP IYVLPAFLQP PVGGTTAPQL RPPVASASAA 780 GFVGGPRPPV SHAPGVAPMN GASPYLALQR PSSAGVRGLA QYMPNPQAYP IGSSATAAQP 840 ATGQPARFLG RADLAAPTQS TTPPRYSWVL PSSAAPAASS AAAAPLPAHL HAPLGALPPQ 900 QPKPAQQPQA PSQGHEPASA LQQNGVHPAG QSGSMVDAQL ST*

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MPVNAAMPPL PDAEPSRSAS PHNPEPGTPK RDRSPPNSPD SSLKLSGLTK SGRRRRQHPV  60
AEIKGGWTTE EDAKLKELVD KYGEGSWSKL VPHFQGRIGK QLRERWNHEL RPDILKGSWT  120
EEEEAMLVVQ HRIYRNAWAD IAKMLPGRTC NAVKNHWNAT LRRVNRGSER PLQGPVERYM  180
QELGLIESRA KRGTVHRTHN FQVQSSRSIS ATPSSRPEVT SKARWVPVPP PSMKIAPTAR  240
NPGSSVQAES TPAMVSEEGQ GQSRPATPRL EAATPTQPPP GLVPPAASTA MSAPQPAEAM  300
HLHPSTIAMK WGHTDMEIAG IPESAAEYWK MLQDDPKEGA IKMDQDRESK KVQGSGDGTA  360
EEAEPSVAAV GAAQDDEHKP SSNGKSGKRQ RTAPQDSVYH FFQRSSSPQA APQQKGPVME  420
EAAMALLLLD GSTAPAVTLH IQLTISTQNT HLLGTSGEGG EAEELPRLRP HRSRSVHAAD  480
FSYNEDEETC LPPAAKLPKV ARRTRTGMPG AREGMRQVAD ACTQTAPPPA TPAGARPWGA  540
ARSGTAEEQK QMQGQAAMYG VNAAVATARS SGATGGRPVP FATTVNVRDR LAGFIVSLAT  600
VADRWEMRPS ADKDRFRQGL GRSTDSKVVA LRQAVLEKCV AVKGPSPGQA VHAMAALLAE  660
MAPIINAAFE AASDSQLGTK PNPLAAFSQM QPPVSAGTNF GATAGHRLAP GSAPPVPLSS  720
SAAQLLPQAV GPPRAPPVTM STAPPNTAAP IYVLPAFLQP PVGGTTAPQL RPPVASASAA  780
GFVGGPRPPV SHAPGVAPMN GASPYLALQR PSSAGVRGLA QYMPNPQAYP IGSSATAAQP  840
ATGQPARFLG RADLAAPTQS TTPPRYSWVL PSSAAPAASS AAAAPLPAHL HAPLGALPPQ  900
QPKPAQQPQA PSQGHEPASA LQQNGVHPAG QSGSMVDAQL ST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-36	63	163	6	106	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649260.1	0.0	hypothetical protein COCSUDRAFT_46919
TrEMBL	I0Z247	0.0	I0Z247_COCSC; Uncharacterized protein
STRING	XP_005649260.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15	16	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.1	8e-34	myb domain protein 3r-3

Link Out ? help Back to Top
Entrez Gene	17042717

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]