PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pg.C_50154

Common Name

COCSUDRAFT_46871

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

GATA

Protein Properties

Length: 405aa MW: 42780.3 Da PI: 9.8478

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pg.C_50154	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.6	1.3e-16	62	90	1	29
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGly 29 Cs+Cgt Tp+WR+gp+g+ktLCnaCG++ estExt_fgenesh1_pg.C_50154 62 CSQCGTNRTPQWREGPEGPKTLCNACGVK 90 ***************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	12.057	56	89	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.0E-8	56	106	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.8E-11	59	93	No hit	No description
Gene3D	G3DSA:3.30.50.10	9.9E-13	60	89	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.39E-12	61	96	No hit	No description
PROSITE pattern	PS00344	0	62	87	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	6.0E-14	62	90	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MAVVQQYMAA AEMGVAAAYL MEMGGNGGKI TSKEVFKQAA ARSSLPYARP NFIGLGAGGK 60 TCSQCGTNRT PQWREGPEGP KTLCNACGVK RVRQMRMLTD GHKRRPPAAA TAPLKTALSL 120 AKQSSGSLTS DSNAVIRRRD RSPAVRRPQR KAAAKAASRT AEFATTGDWP DDEADASYPV 180 RSAAQSTFTD PSGSEDSAAL NSDSAEEVAW TPTRGPGPAH TSMPQPPSPF PVVGHETAAA 240 VNLLSMSIHE QDLGAGRAAA GALAARDLST FYEHHQYGKQ MGSPMTFNSA AFAAMVNSSM 300 NEVPGAKPEE QPAAAEELKD ALRRLPHGKQ TEMALVKERL ENSLREEAAA NAAVAAVAKI 360 LAMKQAAGIR ARAAAAAASR DMQRFMAELD EEFSLSNILK KQRT*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MAVVQQYMAA AEMGVAAAYL MEMGGNGGKI TSKEVFKQAA ARSSLPYARP NFIGLGAGGK  60
TCSQCGTNRT PQWREGPEGP KTLCNACGVK RVRQMRMLTD GHKRRPPAAA TAPLKTALSL  120
AKQSSGSLTS DSNAVIRRRD RSPAVRRPQR KAAAKAASRT AEFATTGDWP DDEADASYPV  180
RSAAQSTFTD PSGSEDSAAL NSDSAEEVAW TPTRGPGPAH TSMPQPPSPF PVVGHETAAA  240
VNLLSMSIHE QDLGAGRAAA GALAARDLST FYEHHQYGKQ MGSPMTFNSA AFAAMVNSSM  300
NEVPGAKPEE QPAAAEELKD ALRRLPHGKQ TEMALVKERL ENSLREEAAA NAAVAAVAKI  360
LAMKQAAGIR ARAAAAAASR DMQRFMAELD EEFSLSNILK KQRT*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00554	DAP	Transfer from AT5G49300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649143.1	0.0	hypothetical protein COCSUDRAFT_46871
TrEMBL	I0Z1T0	0.0	I0Z1T0_COCSC; Uncharacterized protein
STRING	XP_005649143.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP220	14	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	2e-12	GATA transcription factor 9

Link Out ? help Back to Top
Entrez Gene	17042601

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]