PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pg.C_40271 | ||||||||
Common Name | COCSUDRAFT_46687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | bZIP | ||||||||
Protein Properties | Length: 239aa MW: 25548.6 Da PI: 10.9566 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.1 | 4.3e-09 | 210 | 239 | 2 | 31 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeL 31 +el+r+rr+ +NRe+ArrsR+RK++ + L estExt_fgenesh1_pg.C_40271 210 AELRRARRMLSNRESARRSRRRKQEHLSTL 239 699**********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.3E-6 | 204 | 238 | No hit | No description |
Pfam | PF00170 | 6.0E-7 | 210 | 239 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.87E-5 | 212 | 239 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 216 | 231 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MQRQFSVDDF NNLSGFWKLG ASMAGFPRTD SEAAFQDFLK RIPSTSNLAA QAQGLDQAQQ 60 LHLQQQVQQF QQAQQAGLHA AGSGGALGEV GGLNVGGIPR VPSLDLLRQL VQVNQTLSPQ 120 GHKGPTSMPE VGIRSTEPEL APAVSSVAAT MPLLSSVPLS SGLPQTSSNV NPVAAALQLG 180 NFHGIHPQQV RSSGNTSDCG PSDKETNGKA ELRRARRMLS NRESARRSRR RKQEHLSTL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 232 | RRSRRRKQ |
2 | 227 | 232 | SRRRKQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005649906.1 | 1e-172 | hypothetical protein COCSUDRAFT_46687, partial | ||||
TrEMBL | I0Z3Z3 | 1e-171 | I0Z3Z3_COCSC; Uncharacterized protein (Fragment) | ||||
STRING | XP_005649906.1 | 1e-172 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5228 | 8 | 9 |
Link Out ? help Back to Top | |
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Entrez Gene | 17043364 |
Publications ? help Back to Top | |||
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