PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_30314
Common NameCOCSUDRAFT_46492
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bHLH
Protein Properties Length: 337aa    MW: 35584.3 Da    PI: 7.6753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_30314genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-1458103555
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h e E+rRRdriN++f  LrellP+      +K++Ka  L   v YI++Lq
  estExt_fgenesh1_pg.C_30314  58 HIETEQRRRDRINDGFKALRELLPTT-----EKMDKANFLMACVSYIRQLQ 103
                                 899**********************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.33253102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1554110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.56E-1256104No hitNo description
Gene3DG3DSA:4.10.280.102.5E-1557109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-1258103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-1059108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSGVAGLAEA AQSLRDMETD AHRPILEEEE EAAGDEAAGR PAKMARTESG AARSTLRHIE  60
TEQRRRDRIN DGFKALRELL PTTEKMDKAN FLMACVSYIR QLQAVMQQLL VMGAVSKLPE  120
EVQWNVRVLL PRKEEPAAAA AKAAQAAAGP FVVQFPGLHM PIQQGQGDAA HLQSLLLAQQ  180
LQQQQQQQQQ QQSQLVQAGS FQLALQLQQL LQSTQQDLSG NNVVAQLAQQ QPGMLATLGM  240
LLPGLNAASN AGSQPAAAQQ APVQASAAPG GCYAAAPAAM DASHIIGGGN APAKARKTTK  300
VRRHTTAARL SKPPSPSDEL ASSMPEGRPS PAEIGS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005650645.10.0hypothetical protein COCSUDRAFT_46492
TrEMBLI0Z6320.0I0Z632_COCSC; Uncharacterized protein
STRINGXP_005650645.10.0(Coccomyxa subellipsoidea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.12e-09bHLH family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]