PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_fgenesh1_pg.C_30132

Common Name

COCSUDRAFT_46386

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 694aa MW: 75055.8 Da PI: 6.1394

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_fgenesh1_pg.C_30132	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.5	2.5e-07	278	324	2	49
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 k++k+ + kNReA+rr+R++ ka++++Leek +e e+ +++L +l estExt_fgenesh1_pg.C_30132 278 KASKKDDLRSKNREAQRRFREKQKAKLDQLEEKQAEVEEYRRRLE-RL 324 67899999***************************9999998665.33 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14688	1.08E-7	286	342	No hit	No description
PROSITE pattern	PS00036	0	286	299	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MDWQPDSSLP LSSLPLSEAS FGLSSIQSKQ SLGEKVSLAS KQMALSVLDI LAAKPPGPSS 60 PPCSDPAPAA SEQAEAGQPS SRSPQQASPL AGLDRELSIR NLPDPVPMQS PAQLVEIGGP 120 LADPPQTLQP PMAEMCSPSG RVLPPAQYPL FTQMPSPIPS SAFALQEPQQ HPRSPPGPRT 180 HSLDPLLGRS ARGARAGSSG LLPEGIARRS MRAASGAAVT PAAQPLMKAE LTSGATPQTS 240 GSLGTEMTLG AEMAATGGTS SRPQRRAAGT RGTGEKRKAS KKDDLRSKNR EAQRRFREKQ 300 KAKLDQLEEK QAEVEEYRRR LERLQRDSDE RLQGTATELR RLQLEKTMLQ VRESRLVDMV 360 GQLERARASG VSPTERAQCL DSITAEAGRV RSGRDADAAA AILDKVLEYI KLEDFEGADA 420 AALQGPDGRS RCEALRLNSH MLQATRSQEG TIVTVKDLIN LPRESFLTLY AACVKELVAL 480 LEECPQTEPA LEDPHGAFIT PAELRVQSLV REVRAVMCCF AATDAREAAL QQLRHADDWS 540 PVDPDTDRRI CRAALRAMRV TEEQELAMRD AHGQFVARQQ SLAQHRAQAL PFLQAALYTS 600 ADPSTHTCLR AHEAAALVRR TADEECDNIC RLSTFFLGRV LSDWQVAVML ARSHPHSAHI 660 MGIIEAVVNG DEMEEEQLDR QGTGVSVDTD LSS*

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MDWQPDSSLP LSSLPLSEAS FGLSSIQSKQ SLGEKVSLAS KQMALSVLDI LAAKPPGPSS  60
PPCSDPAPAA SEQAEAGQPS SRSPQQASPL AGLDRELSIR NLPDPVPMQS PAQLVEIGGP  120
LADPPQTLQP PMAEMCSPSG RVLPPAQYPL FTQMPSPIPS SAFALQEPQQ HPRSPPGPRT  180
HSLDPLLGRS ARGARAGSSG LLPEGIARRS MRAASGAAVT PAAQPLMKAE LTSGATPQTS  240
GSLGTEMTLG AEMAATGGTS SRPQRRAAGT RGTGEKRKAS KKDDLRSKNR EAQRRFREKQ  300
KAKLDQLEEK QAEVEEYRRR LERLQRDSDE RLQGTATELR RLQLEKTMLQ VRESRLVDMV  360
GQLERARASG VSPTERAQCL DSITAEAGRV RSGRDADAAA AILDKVLEYI KLEDFEGADA  420
AALQGPDGRS RCEALRLNSH MLQATRSQEG TIVTVKDLIN LPRESFLTLY AACVKELVAL  480
LEECPQTEPA LEDPHGAFIT PAELRVQSLV REVRAVMCCF AATDAREAAL QQLRHADDWS  540
PVDPDTDRRI CRAALRAMRV TEEQELAMRD AHGQFVARQQ SLAQHRAQAL PFLQAALYTS  600
ADPSTHTCLR AHEAAALVRR TADEECDNIC RLSTFFLGRV LSDWQVAVML ARSHPHSAHI  660
MGIIEAVVNG DEMEEEQLDR QGTGVSVDTD LSS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005650353.1	0.0	hypothetical protein COCSUDRAFT_46386
TrEMBL	I0Z590	0.0	I0Z590_COCSC; Uncharacterized protein
STRING	XP_005650353.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17043813

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]