PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_20478
Common NameCOCSUDRAFT_46285
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family C2H2
Protein Properties Length: 859aa    MW: 91813.8 Da    PI: 7.7188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_20478genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014291313223
                                 EETTTTEEESSHHHHHHHHHH.T CS
                     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                 +C  C   F ++++L +H r  H
  estExt_fgenesh1_pg.C_20478 291 ECVGCLIAFATPDELAQHRRErH 313
                                 59******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.0E-558112IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.32E-561114No hitNo description
PROSITE profilePS500899.4866107IPR001841Zinc finger, RING-type
SMARTSM003557.3169196IPR015880Zinc finger, C2H2-like
SMARTSM003552.7232255IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280234255IPR007087Zinc finger, C2H2
SMARTSM003554.7256284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452290318IPR007087Zinc finger, C2H2
SMARTSM0035511290313IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280292313IPR007087Zinc finger, C2H2
SMARTSM003930.0097537616IPR001374R3H domain
SuperFamilySSF827081.92E-12542631IPR001374R3H domain
PROSITE profilePS5106112.899554617IPR001374R3H domain
PfamPF014248.1E-12556615IPR001374R3H domain
CDDcd023256.84E-12557615No hitNo description
Gene3DG3DSA:3.30.1370.502.1E-10557620IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 859 aa     Download sequence    Send to blast
MGHYQNEHIY SENMQQTGPG RPQRPPLDNR RLRGARPCIR PQEGEVKSGG KCESSGAQQE  60
EDVPACVICT GPLSIVAVGS CNHKDICARC SLLMRLNYDD IACPFCKTEL SQVILTRWKP  120
EGVPDFSELK GRSGTMWRKP AWARGVLVDN QSSSGGSPLS STVQGITAVA CPVCDEVGAR  180
PFRSVNLLQA HVKVEHGRSL CSICLSAKRR FPLELEAYSA DDLAAHMAAE HPRCDFCNLH  240
MYSGDELYEH MREQHFTCDI CQRAGSFLHF TSSDALIGHL RSDHHLCEEA ECVGCLIAFA  300
TPDELAQHRR ERHSRAMPRF NRARARIMPL GLDAFPSRPL PTSPDRDRVQ EQSVGRSQRP  360
RSGGRGSSGS AARAGGRGRE SAPQPRPAEE PSTSGGMVMI DDDLGMTGDA FPAMGPAASG  420
SRQGSEARRH AQEEQGSEEF PSLQAAAQSA SQANGHAPGG SAQTRPPALP SLQKVTVKCA  480
CGRRVSHIAL PVGTAPKPIR CDAECERVQR SSRLADAFGI GDPGHHVPWV DRQRQAMQDA  540
HYSPELLLYA WHNRAAVEDL ERQLADFVAD GAKKRASLAA APKQARHIAH LLAEQYGLAT  600
QSFGAEPNRC VQLFKGAHAA VPRQALSRAA AGMPLEDLER AVRAEKGFPV HFTDVAPAAD  660
LHRILQRWEG QFVLSGPHAD GSAAARFSRP EGAKEVLDAL GGGVRGQYRI NRAASTPAAS  720
APAAVPQAHA GSTCAASASR PTAGHQSSHT GISSSGHCSS HQRPQPPRPS GTFVVSAKID  780
PLAIRASDMA FEESPASAKP AKTKPETRLP AGVLPGSILK DGTSKESANG AATVGQDAEA  840
GSHLVAENWE DAADDGQE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005651469.10.0hypothetical protein COCSUDRAFT_46285
TrEMBLI0Z8F60.0I0Z8F6_COCSC; Uncharacterized protein
STRINGXP_005651469.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP455633
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]