PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_fgenesh1_pg.C_170042 | ||||||||
Common Name | COCSUDRAFT_48716 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 25768.2 Da PI: 7.3042 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 60 | 109 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h++ E+rRRdri +++ Lre++ ++ ++K + a+ L+ A eYI++Lq estExt_fgenesh1_pg.C_170042 60 KEKHSATEKRRRDRIHEGIVMLREVVVPQ----KEKEDQAAFLRSAAEYIRQLQ 109 789*************************9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.53E-14 | 55 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-15 | 56 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.81E-13 | 56 | 113 | No hit | No description |
PROSITE profile | PS50888 | 13.459 | 58 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-10 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-7 | 64 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSAPNTDLGE LAAIPLSQIL GSKPGTSTDD QAAAASPAPG PVTQPSSARA TSAEGSSRSK 60 EKHSATEKRR RDRIHEGIVM LREVVVPQKE KEDQAAFLRS AAEYIRQLQT ALQCFTAMGA 120 VKNLPEEVQW SIRALLSRGV PAAAPAAPAA APPLSFPGLP QVLLQLMGNM NGKEQLQAHA 180 QALDPAQMQS AMQQAMMVQQ WQHHLQQCAA QAAHPGQQHL PGMSCHDPQP HPASDAGAGV 240 KEQ* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005644417.1 | 1e-175 | hypothetical protein COCSUDRAFT_48716 | ||||
TrEMBL | I0YNA4 | 1e-174 | I0YNA4_COCSC; Uncharacterized protein | ||||
STRING | XP_005644417.1 | 1e-174 | (Coccomyxa subellipsoidea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 2e-09 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 17037847 |
Publications ? help Back to Top | |||
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