PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_170042
Common NameCOCSUDRAFT_48716
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bHLH
Protein Properties Length: 244aa    MW: 25768.2 Da    PI: 7.3042
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_170042genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-1260109255
                                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +++h++ E+rRRdri +++  Lre++ ++    ++K + a+ L+ A eYI++Lq
  estExt_fgenesh1_pg.C_170042  60 KEKHSATEKRRRDRIHEGIVMLREVVVPQ----KEKEDQAAFLRSAAEYIRQLQ 109
                                  789*************************9....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1455117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-1556113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-1356113No hitNo description
PROSITE profilePS5088813.45958108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-1060109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-764114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSAPNTDLGE LAAIPLSQIL GSKPGTSTDD QAAAASPAPG PVTQPSSARA TSAEGSSRSK  60
EKHSATEKRR RDRIHEGIVM LREVVVPQKE KEDQAAFLRS AAEYIRQLQT ALQCFTAMGA  120
VKNLPEEVQW SIRALLSRGV PAAAPAAPAA APPLSFPGLP QVLLQLMGNM NGKEQLQAHA  180
QALDPAQMQS AMQQAMMVQQ WQHHLQQCAA QAAHPGQQHL PGMSCHDPQP HPASDAGAGV  240
KEQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005644417.11e-175hypothetical protein COCSUDRAFT_48716
TrEMBLI0YNA41e-174I0YNA4_COCSC; Uncharacterized protein
STRINGXP_005644417.11e-174(Coccomyxa subellipsoidea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-09phytochrome interacting factor 3
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]