PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_fgenesh1_pg.C_130010
Common NameCOCSUDRAFT_48229
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family GATA
Protein Properties Length: 600aa    MW: 63367.7 Da    PI: 5.1777
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_fgenesh1_pg.C_130010genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.2e-16563594132
                         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                                  C++Cgt  Tp WR gp g+ktLCnaCG++y k
  estExt_fgenesh1_pg.C_130010 563 CTQCGTQVTPVWRAGPYGPKTLCNACGVRYMK 594
                                  *****************************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.7E-8557599IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.453557599IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-12559596No hitNo description
Gene3DG3DSA:3.30.50.106.0E-14561597IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.86E-9562592No hitNo description
PfamPF003201.9E-13563595IPR000679Zinc finger, GATA-type
PROSITE patternPS003440563588IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MEVLFEPKCA ICPAEPDDLA SGGCSDGCEL LTGEVCEASW WDGLLNGSES EGPEAGFNGS  60
QHELSAMEWQ TIGGLEADCD PNNIPCMADE LEHFSEQLPF LQPCEPEILP SPVLQNCLSS  120
SNVSALSCAT KASVPAVFAA QPPAMVEAAE EEAAEADAAA AASASPTCRG VLMAVALNQR  180
EPKGEEEEGG PLSPALRALR MKLPDSLKNA EAIRDGCSPP FAGAWRGCAK SSWCNRENRH  240
RGVCNTRAEV PGLAAYGAEQ LAAEGVRGAD FPGQWQLPGT FIKEEQPRRD DLDDSEQASA  300
TEVLLERACD PDAQCLDSGI PRCCQVSIEP QPNCHSRTRL RLMVKRQQQA PAEEGSPPDG  360
PPTPELQAPA FASQESSDSA NTQRETDASS EDTGGADADE VRCCAHIDRS PPPKATLAAA  420
KTSERLRRVS PSTPEATAHR PSSKPTPERL ERSLQVSAAA GRREAVVSPF AASLPLSHAT  480
GRGSSPGGFV QTSSGRIARP TPKTAASRAA SDDLSELSHT EGHRAPTKRK SGRPAKGGEK  540
SKRRRMVGGI LKTVGHAAPG QQCTQCGTQV TPVWRAGPYG PKTLCNACGV RYMKQVKKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1527544KRKSGRPAKGGEKSKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005645537.10.0hypothetical protein COCSUDRAFT_48229
TrEMBLI0YRH40.0I0YRH4_COCSC; Uncharacterized protein
STRINGXP_005645537.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP43691012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-06GATA transcription factor 9
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]