PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_70364
Common NameCOCSUDRAFT_66058
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family C2H2
Protein Properties Length: 1115aa    MW: 116478 Da    PI: 6.1002
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_70364genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014747768122
                               EEETTTTEEESSHHHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                               ++C  Cg + ++  +L+ H+r 
  estExt_Genemark1.C_70364 747 HECVVCGITTTSAAHLEAHMRG 768
                               78******************96 PP
2zf-C2H213.50.0002210801104123
                                EEETTTTEEESSHHHHHHHHHH..T CS
                   zf-C2H2    1 ykCpdCgksFsrksnLkrHirt..H 23  
                                y C+ Cg++ ++ +++k+Hirt  H
  estExt_Genemark1.C_70364 1080 YNCEVCGTTATDLETYKQHIRTkpH 1104
                                89*******************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004514202236IPR003604Zinc finger, U1-type
SMARTSM003556.8205229IPR015880Zinc finger, C2H2-like
SMARTSM003554.3235259IPR015880Zinc finger, C2H2-like
PfamPF128742.9E-6237259No hitNo description
SMARTSM004510.51237266IPR003604Zinc finger, U1-type
SuperFamilySSF576678.46E-7237264No hitNo description
SMARTSM004510.15275309IPR003604Zinc finger, U1-type
SuperFamilySSF576677.06E-8277309No hitNo description
SMARTSM003550.081278302IPR015880Zinc finger, C2H2-like
PfamPF128744.5E-6280302No hitNo description
SuperFamilySSF576673.33E-7320356No hitNo description
SMARTSM004510.05323357IPR003604Zinc finger, U1-type
SMARTSM003552.7326350IPR015880Zinc finger, C2H2-like
PfamPF128742.3E-5327350No hitNo description
SMARTSM004515.6E-4546580IPR003604Zinc finger, U1-type
SuperFamilySSF576674.62E-7547579No hitNo description
SMARTSM003550.072549573IPR015880Zinc finger, C2H2-like
PfamPF128749.0E-5550573No hitNo description
SuperFamilySSF576674.77E-9735777No hitNo description
SMARTSM004510.0024744778IPR003604Zinc finger, U1-type
SMARTSM003550.023747771IPR015880Zinc finger, C2H2-like
PfamPF128741.9E-6748771No hitNo description
SMARTSM004510.028785819IPR003604Zinc finger, U1-type
SuperFamilySSF576672.65E-7785816No hitNo description
SMARTSM003551.8788812IPR015880Zinc finger, C2H2-like
PfamPF128742.4E-6789812No hitNo description
SuperFamilySSF576674.21E-510751110No hitNo description
SMARTSM004510.1410771111IPR003604Zinc finger, U1-type
PfamPF128740.005310801104No hitNo description
SMARTSM003558.110801104IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1115 aa     Download sequence    Send to blast
MLAEAQEELP TEPLTSTGLR HHTTPLDQKE ALLDGKAALQ ITASADSRTQ QEFGTLPRAP  60
EHKEHAAGSQ APAPSTCSPP PDMHQALRAE GSAAVEGAPQ RASTAAEGEV RQQGSDTTGV  120
VTRVWRRGSQ DSEEGGYSSS PSSTASTLML KPLTPAQSGE HRLHGIKDAS DADAAAAKAA  180
AAQPYTAAVG ALDADGESSD GATVLRCRVC QTSAESEEEW REHCDGAMHR ARSQGSCEVC  240
DISATSPDLL VQHLQGRKHL RRLAEEADAA GARQAAEYPC DVCKVVTSSE EQLAVHMDGK  300
RHRKHIAMAE VTSSLTEDTG ADGEELHCEL CDVTAPSSTH KQIHLRGQKH QRREKQEQHL  360
TEAEQLCNST LDSVLDEPGP DTCAGHALQP AQTQSPSMYS TEPQCEQPAA EADPSAGAEA  420
AASGGAEAEA EGDCGILVSR GRAAGASGDE EVEFQGCGVP SAFADTAGFG GNAAGDEDDD  480
GSGGDGPGDR LGALPRRTLT LRPSGMRVRF SQSFDDDALG SDGEDSMRRL SSKPPLAPSG  540
GSVSLAAQHF CPVCGIIATS QANLEDHVRG RRHARRLQYI GNMPESERTP FMQRVASGTP  600
LLLIRAMLCD WHLLRRKDST SSTGSNGDAM TLLRIGSITL PSSMDLRQYL EQMQEVGDGD  660
DDAGPAATAA AAAPPGTASA PTAAAAHGDA GAILQAPGAM TDGAVDARTE ALRPECSDTS  720
DSEDFAAAEA AHGDGSGDIS NGPKERHECV VCGITTTSAA HLEAHMRGRK HKRRVEVSGA  780
RVQRPSSHYC KICDITTTSA QHMAMHVAGK AHLRRLTTGH LPAAAAQAVA ASAAAEAAVL  840
GDSAAGSLQV RAASSTSSRQ PSPAPRSAAE AAAAAAAAAA ASTVAHNSEL MTRLDRGSSL  900
RSADGGQAAK HRQLPQLHMQ QQQQQQWALH QQHMPAMQAG AVLHPSSPYG VQYVGYYPQQ  960
QAFYQAHVPG HQRTMQGYMP PAGWAQWGPH SGGFPGREAA FSAAAAAPGA AFAQHPVMYA  1020
AAQLSPRYAY AAMPPQPQAG GYVAAQQQPG HYVNGGGVGY MGAAGAAPFA QPGLQQGADY  1080
NCEVCGTTAT DLETYKQHIR TKPHLRRVNN NHRQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005648247.10.0hypothetical protein COCSUDRAFT_66058
TrEMBLI0YZ840.0I0YZ84_COCSC; Uncharacterized protein
STRINGXP_005648247.10.0(Coccomyxa subellipsoidea)
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]