PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_Genemark1.C_50268

Common Name

COCSUDRAFT_65460

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

SBP

Protein Properties

Length: 838aa MW: 86997.9 Da PI: 6.9594

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_Genemark1.C_50268	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	86.1	4.2e-27	58	134	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C+vegC+ +ls++ yh++ ++C++h kap+ + +gl+qrfCq+C+r hel+ f+ +krsC +Lakhn+rrr++q estExt_Genemark1.C_50268 58 RCRVEGCRRELSDLSAYHQKCRICDIHIKAPSFMRAGLKQRFCQRCGRCHELDAFEGSKRSCIAQLAKHNARRRRQQ 134 6*************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.0E-22	55	119	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	24.196	56	133	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.84E-24	58	136	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.9E-25	59	132	IPR004333	Transcription factor, SBP-box
CDD	cd00204	1.57E-9	580	724	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.2E-11	583	730	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.18E-10	584	721	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.194	626	724	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MRKRAFGHGW YQRRAAETSG GDETAWNLHD WNWDSQNFTA TPKKGIVAAA KPCRAAKRCR 60 VEGCRRELSD LSAYHQKCRI CDIHIKAPSF MRAGLKQRFC QRCGRCHELD AFEGSKRSCI 120 AQLAKHNARR RRQQGTTAAS DDLSALSLDL ATAQSNVLES LNSRTHSLHV PMSQALPPGF 180 SYQGLMGPDV ALGIPIGVQG NMQAHTSAAM PLMMSSMQAP PTTSMVSSME QALMQMGHPS 240 AAGQLESPQE SITPEFADDK PGPIQQQPVT AASAVAAGLP AAAAYQANSL VVRLSVKLFN 300 CTPGDLPQGL REQLCNWLCA TPAGAEGYIR PGCLHLTMQV HVDAAAEVAE GVMPVVESLL 360 EQPGELWRTH RMLLQRDAEV ALVHDGQLQS VAVALSAQQP GNTQPLIREV LPKVVVCQEG 420 AHQDIAVQVT GVGLASADTT ILARCHGHYL EVQVEGEQSE GDKSLLSLRL RGPAAPGLVW 480 VETQHGVMLS PATPLLILPA GLHDLAADVL RIVSSPAKQE ASADSQRKCC DGFLADLGLV 540 ISQAGALPGP AGSTLEHPAE QLTCAAAQPG PPVTATLVTR TARHLLAFAC DAGAPALAHF 600 LLPSASVGCR SAAEVVAAVD GVEAQGGSTL LHRAARSGSG PLLRGLLAWG STNGYRWKAD 660 ARDANGLTPL HFTAIVPDAD LAVHLLLACG CSPRVWFTAA ADDGLTPAHF AARVGRNDLN 720 ERMLLLAQEA QPGSLPIKPG CGCTCGDACA CSRSGICRCA AASEGPSCGG SGGHSSDAGA 780 VSSGGQSSAG GCCGSTGSCG GTVVYADSVP SACSSSDGAL APAGNRPMSA CCVGVSL*

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MRKRAFGHGW YQRRAAETSG GDETAWNLHD WNWDSQNFTA TPKKGIVAAA KPCRAAKRCR  60
VEGCRRELSD LSAYHQKCRI CDIHIKAPSF MRAGLKQRFC QRCGRCHELD AFEGSKRSCI  120
AQLAKHNARR RRQQGTTAAS DDLSALSLDL ATAQSNVLES LNSRTHSLHV PMSQALPPGF  180
SYQGLMGPDV ALGIPIGVQG NMQAHTSAAM PLMMSSMQAP PTTSMVSSME QALMQMGHPS  240
AAGQLESPQE SITPEFADDK PGPIQQQPVT AASAVAAGLP AAAAYQANSL VVRLSVKLFN  300
CTPGDLPQGL REQLCNWLCA TPAGAEGYIR PGCLHLTMQV HVDAAAEVAE GVMPVVESLL  360
EQPGELWRTH RMLLQRDAEV ALVHDGQLQS VAVALSAQQP GNTQPLIREV LPKVVVCQEG  420
AHQDIAVQVT GVGLASADTT ILARCHGHYL EVQVEGEQSE GDKSLLSLRL RGPAAPGLVW  480
VETQHGVMLS PATPLLILPA GLHDLAADVL RIVSSPAKQE ASADSQRKCC DGFLADLGLV  540
ISQAGALPGP AGSTLEHPAE QLTCAAAQPG PPVTATLVTR TARHLLAFAC DAGAPALAHF  600
LLPSASVGCR SAAEVVAAVD GVEAQGGSTL LHRAARSGSG PLLRGLLAWG STNGYRWKAD  660
ARDANGLTPL HFTAIVPDAD LAVHLLLACG CSPRVWFTAA ADDGLTPAHF AARVGRNDLN  720
ERMLLLAQEA QPGSLPIKPG CGCTCGDACA CSRSGICRCA AASEGPSCGG SGGHSSDAGA  780
VSSGGQSSAG GCCGSTGSCG GTVVYADSVP SACSSSDGAL APAGNRPMSA CCVGVSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-15	59	132	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005649192.1	0.0	hypothetical protein COCSUDRAFT_65460
TrEMBL	I0Z1X9	0.0	I0Z1X9_COCSC; Uncharacterized protein
STRING	XP_005649192.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5500	5	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57920.1	5e-16	squamosa promoter binding protein-like 15

Link Out ? help Back to Top
Entrez Gene	17042649

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]