PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_Genemark1.C_40529

Common Name

COCSUDRAFT_65304

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

MYB_related

Protein Properties

Length: 490aa MW: 51744.3 Da PI: 6.5194

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_Genemark1.C_40529	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.2	2.4e-10	351	399	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 grW + E l+++v+q+G+g Wk+I ++ ++R+ ++k++w+++ estExt_Genemark1.C_40529 351 GRWAEHETNTLIELVRQWGKGKWKKILEEGAaafNNRSQVDLKDKWRNL 399 8************************99889999**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.84	345	404	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-12	346	402	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-6	349	402	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-7	351	399	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.9E-13	351	405	IPR009057	Homeodomain-like
CDD	cd11660	4.79E-14	353	401	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MAGKAEQWVL EFLLDRDSLS ETVVRELYEH LGMGADALSK TIQVRLLLRV LREHAASISD 60 GTLNALNCLA ANSTDNKADY SPFADLSKLV PSLDLYLQVK TELVLQSLRG GSLDTLLHSG 120 NPKEMLDRYF PPPPEGLQNA PEGQRRDELA IGLQSAAGTQ VLLEKYPPGH VEATMLKYVA 180 EGRAAMGQPI LKVMEAQYAQ GLLHPTISSA HPQGAFGNFS IAPKKRQRHS AASNADVAAA 240 TTIADLQAAS KGLQNKGGPD PFPAAMQAAG GQGSFAAALN AVDHGAGPSM TPGMPDGSGR 300 TVGWDSPDPN QVTPGANIGG MLGPNGEPLT DGSMGKSPKN RTGGGKRRRN GRWAEHETNT 360 LIELVRQWGK GKWKKILEEG AAAFNNRSQV DLKDKWRNLE RQGVVQASDG VLPGSAGVLS 420 PEQQQAQQQQ QQQQPMVDAA ALMAPDGGAM MQVQDPAAAA AAAAAAHAQA VGQQEQMMHH 480 VEGGMPAQM*

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MAGKAEQWVL EFLLDRDSLS ETVVRELYEH LGMGADALSK TIQVRLLLRV LREHAASISD  60
GTLNALNCLA ANSTDNKADY SPFADLSKLV PSLDLYLQVK TELVLQSLRG GSLDTLLHSG  120
NPKEMLDRYF PPPPEGLQNA PEGQRRDELA IGLQSAAGTQ VLLEKYPPGH VEATMLKYVA  180
EGRAAMGQPI LKVMEAQYAQ GLLHPTISSA HPQGAFGNFS IAPKKRQRHS AASNADVAAA  240
TTIADLQAAS KGLQNKGGPD PFPAAMQAAG GQGSFAAALN AVDHGAGPSM TPGMPDGSGR  300
TVGWDSPDPN QVTPGANIGG MLGPNGEPLT DGSMGKSPKN RTGGGKRRRN GRWAEHETNT  360
LIELVRQWGK GKWKKILEEG AAAFNNRSQV DLKDKWRNLE RQGVVQASDG VLPGSAGVLS  420
PEQQQAQQQQ QQQQPMVDAA ALMAPDGGAM MQVQDPAAAA AAAAAAHAQA VGQQEQMMHH  480
VEGGMPAQM*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005650104.1	0.0	hypothetical protein COCSUDRAFT_65304
TrEMBL	I0Z4J1	0.0	I0Z4J1_COCSC; Uncharacterized protein
STRING	XP_005650104.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3956	9	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	4e-08	TRF-like 5

Link Out ? help Back to Top
Entrez Gene	17043562

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]