PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_30279
Common NameCOCSUDRAFT_64899
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family E2F/DP
Protein Properties Length: 354aa    MW: 36915.4 Da    PI: 4.5677
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_30279genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.67.9e-2744108170
                   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                               r+++sL+llt+kf++l+e +++g+++ln++a++L   +v  ++RRiYDi+NVLe+++liekk+kn+i+w+
  estExt_Genemark1.C_30279  44 RYDSSLGLLTKKFVALVEAAPDGVLDLNKAAESL---SV--QKRRIYDITNVLEGIGLIEKKSKNNIQWR 108
                               6899******************************...99..****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-2841108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.54E-1744107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-3444109IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.0E-2546108IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.89E-35120226No hitNo description
SuperFamilySSF1440741.02E-21121227No hitNo description
PfamPF164212.6E-21126225IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGDHGGGEAA AGRNSGRVVR RSASRSGTAK SPATTPGQGT GNCRYDSSLG LLTKKFVALV  60
EAAPDGVLDL NKAAESLSVQ KRRIYDITNV LEGIGLIEKK SKNNIQWRPM ATSADEEFSR  120
EIQLMTDEIA LLQSDSDVLE QHIAHVRSSI HSMTEDPANK ERLYVTNEDI VSLATINSDT  180
VFAVTAPQGT SLVVPDPESD VEMGQPRNYR AILTSDTDPI EVWLVSTKNQ ANALPDMAAA  240
NAQHLAMGAL PETPAPLSPG VLFKAEGAAH PTGAAMGAGP VGGAGLDGAM GLPAMGGYGA  300
LAGGLGLAMH PQSPSVFMKM QTPDLDAGTC WYDHDVPPTL GVADIFSDDT ANL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-2432108172PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005650465.10.0hypothetical protein COCSUDRAFT_64899
TrEMBLI0Z5K20.0I0Z5K2_COCSC; Uncharacterized protein
STRINGXP_005650465.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP32581314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.37e-56E2F transcription factor 1
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]