PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_30263
Common NameCOCSUDRAFT_64891
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family B3
Protein Properties Length: 333aa    MW: 35572.1 Da    PI: 10.3723
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_30263genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.3e-1554151197
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                               f+k+lt+sd++ +gr+v+pk +a++h  +++ ++++ + + d+ g + +++++   +++s++y+l+ G     +a +Lk+gD+++
  estExt_Genemark1.C_30263  54 FDKQLTTSDAGGHGRVVIPKVHARAHlpSLEDKNGVHVEVIDTYGTRHRFRYCSwiNNSSRMYLLE-GVAPALNALKLKAGDILI 137
                               89**************************66667899****************55455555555555.****************** PP

                               EEE-SS.SEE..EEEEE CS
                        B3  82 Fkldgr.sefelvvkvf 97 
                               F    +  ++el+++ +
  estExt_Genemark1.C_30263 138 FA---KlPNGELLLGGR 151
                               *9...447777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-2348158IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-1750155IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-1552138No hitNo description
PfamPF023623.7E-1154139IPR003340B3 DNA binding domain
SMARTSM010193.4E-754154IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MASVDNSSQP SAAPAATDAS APSSGAPENA TTSAGTPTHG THASLEAYSA TFLFDKQLTT  60
SDAGGHGRVV IPKVHARAHL PSLEDKNGVH VEVIDTYGTR HRFRYCSWIN NSSRMYLLEG  120
VAPALNALKL KAGDILIFAK LPNGELLLGG RTRTSADKDR KAPPRARKGS EQGANGTPAA  180
GAKRPRLNGG ATGGPQQRQK SNASPLMYRP LCDGVFRAVP PTISAREYCG KVLQQGGTWT  240
AILDVSGEAY QAFFDSQGAA MEALNAAGVL PREVLQVVVG RQGAVEAMEG RVDLAETVRE  300
RLLTEIRRAR QRRRGSRWHA EECRSRVLER AR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C8e-235315622126B3 domain-containing transcription repressor VAL1
5yzz_C8e-235315622126B3 domain-containing transcription repressor VAL1
5z00_C8e-235315622126B3 domain-containing transcription repressor VAL1
5z00_G8e-235315622126B3 domain-containing transcription repressor VAL1
5z00_K8e-235315622126B3 domain-containing transcription repressor VAL1
5z00_M8e-235315622126B3 domain-containing transcription repressor VAL1
6j9a_A7e-235315623127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005650444.10.0hypothetical protein COCSUDRAFT_64891
TrEMBLI0Z5I10.0I0Z5I1_COCSC; Uncharacterized protein
STRINGXP_005650444.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41131011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.17e-23high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]