PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_Genemark1.C_30205 | ||||||||
Common Name | COCSUDRAFT_64860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | GATA | ||||||||
Protein Properties | Length: 251aa MW: 27070 Da PI: 6.0471 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 41.1 | 2.5e-13 | 205 | 234 | 1 | 32 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C+ Cgtt+TplWR+ +dg++ CnaCGl+ ++ estExt_Genemark1.C_30205 205 CEDCGTTQTPLWRQYEDGTY--CNACGLRRKR 234 ********************..*******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.14E-9 | 198 | 234 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.6E-12 | 199 | 234 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 13.89 | 199 | 233 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.0E-8 | 199 | 248 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 5.55E-9 | 204 | 234 | No hit | No description |
Pfam | PF00320 | 3.1E-10 | 205 | 233 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MYSSSELCGN AELLRKIMQH ATDGHSGNGV GETADLTNKE LALGFPDHSA EDKSEDDEIE 60 ALHAGCSHFG LDDGLAFGYM RQYDSDPTAG YFSEPGSTDD LERLRTLGSQ DSAWTVLLPR 120 QRRRKSEKPA RAPEAVGPEW YAEQRLAKRM AASLLPLGSS VPMQLRRPRS KSRADFPAAD 180 RAASAGAALA GAALALDSKG SSRECEDCGT TQTPLWRQYE DGTYCNACGL RRKRADGAYV 240 RSSKASSAMQ * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 125 | QRRRKS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005650386.1 | 0.0 | hypothetical protein COCSUDRAFT_64860 | ||||
TrEMBL | I0Z5C3 | 0.0 | I0Z5C3_COCSC; Uncharacterized protein | ||||
STRING | XP_005650386.1 | 0.0 | (Coccomyxa subellipsoidea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 2e-06 | GATA family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17043846 |
Publications ? help Back to Top | |||
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