PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | estExt_Genemark1.C_200086 | ||||||||
Common Name | COCSUDRAFT_67968 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | bZIP | ||||||||
Protein Properties | Length: 395aa MW: 43203.6 Da PI: 9.6233 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.1 | 2.5e-15 | 318 | 365 | 1 | 48 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 e+ + ++r+ kNRe+A rsRqRK+++++ Le+ v+eL+++N++L ++ estExt_Genemark1.C_200086 318 ERTQRLQKRMVKNRESAARSRQRKQEYTATLEQQVDELKQQNRELLER 365 677899*************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.7E-12 | 318 | 387 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.9E-13 | 318 | 366 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.565 | 320 | 366 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 7.43E-20 | 322 | 375 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-13 | 322 | 366 | No hit | No description |
SuperFamily | SSF57959 | 6.19E-11 | 322 | 366 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 325 | 340 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MGTLQRQTTL SKQTSAVFQM TLDQLQQSVG SGKPFGSMNM EDFLAAVWDR DAGGVPPPSE 60 AGYNLPEEVP AFQPQAPAAL HPDYSGKTVE EVWNSIHKSN GNNEGQQQGV LPGFQTVTLG 120 SFLERVGVDF PSMDLQQDGL LPPAPELQVH TFYPQVDAAV HITQSAPMRV KKDLGLPYIS 180 QQFDPVIQPR ASRRGGRPPF QEQEEAGRSP SIVEGRPWPL ARPPSPPISM PQTPSHSPSS 240 QPEKNGPMSG PSSMPIDFPP STSAPGTSQQ GGRTAMAQQS LGMPPLPLQQ PTSKQSPGAA 300 ARAARQRKRK AEPEVMDERT QRLQKRMVKN RESAARSRQR KQEYTATLEQ QVDELKQQNR 360 ELLERVIAHC QPPPAAHVPT LEGQPLRRTR TTPL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00409 | DAP | Transfer from AT3G56850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005643639.1 | 0.0 | hypothetical protein COCSUDRAFT_67968 | ||||
TrEMBL | I0YL26 | 0.0 | I0YL26_COCSC; Uncharacterized protein | ||||
STRING | XP_005643639.1 | 0.0 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP9391 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G45249.1 | 2e-11 | abscisic acid responsive elements-binding factor 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 17037025 |
Publications ? help Back to Top | |||
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