PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_200086
Common NameCOCSUDRAFT_67968
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bZIP
Protein Properties Length: 395aa    MW: 43203.6 Da    PI: 9.6233
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_200086genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.12.5e-15318365148
                                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                                e+  + ++r+ kNRe+A rsRqRK+++++ Le+ v+eL+++N++L ++
  estExt_Genemark1.C_200086 318 ERTQRLQKRMVKNRESAARSRQRKQEYTATLEQQVDELKQQNRELLER 365
                                677899*************************************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.7E-12318387IPR004827Basic-leucine zipper domain
PfamPF001706.9E-13318366IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.565320366IPR004827Basic-leucine zipper domain
CDDcd147077.43E-20322375No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-13322366No hitNo description
SuperFamilySSF579596.19E-11322366No hitNo description
PROSITE patternPS000360325340IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGTLQRQTTL SKQTSAVFQM TLDQLQQSVG SGKPFGSMNM EDFLAAVWDR DAGGVPPPSE  60
AGYNLPEEVP AFQPQAPAAL HPDYSGKTVE EVWNSIHKSN GNNEGQQQGV LPGFQTVTLG  120
SFLERVGVDF PSMDLQQDGL LPPAPELQVH TFYPQVDAAV HITQSAPMRV KKDLGLPYIS  180
QQFDPVIQPR ASRRGGRPPF QEQEEAGRSP SIVEGRPWPL ARPPSPPISM PQTPSHSPSS  240
QPEKNGPMSG PSSMPIDFPP STSAPGTSQQ GGRTAMAQQS LGMPPLPLQQ PTSKQSPGAA  300
ARAARQRKRK AEPEVMDERT QRLQKRMVKN RESAARSRQR KQEYTATLEQ QVDELKQQNR  360
ELLERVIAHC QPPPAAHVPT LEGQPLRRTR TTPL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00409DAPTransfer from AT3G56850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005643639.10.0hypothetical protein COCSUDRAFT_67968
TrEMBLI0YL260.0I0YL26_COCSC; Uncharacterized protein
STRINGXP_005643639.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP939144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.12e-11abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]