PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_Genemark1.C_140059

Common Name

COCSUDRAFT_67181

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

GATA

Protein Properties

Length: 962aa MW: 97144.9 Da PI: 7.7906

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_Genemark1.C_140059	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	36.5	6.6e-12	882	911	1	32
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C+ Cgtt+Tp WRr++ ++ LCnaCGl+ +k estExt_Genemark1.C_140059 882 CEECGTTETPTWRRWG--PTLLCNACGLRRKK 911 ***********997..888*******99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	5.5E-10	875	912	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.38E-8	876	913	No hit	No description
PROSITE profile	PS50114	12.255	876	910	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.3E-8	876	926	IPR000679	Zinc finger, GATA-type
CDD	cd00202	1.45E-11	881	920	No hit	No description
Pfam	PF00320	5.5E-10	882	911	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 962 aa Download sequence Send to blast
MADEEPSSAP AAPTQAAAPS PEQPPVESPP QHSPSPSAGA EQPAAVAPQP ERNVSPSASD 60 AKAQGTPHER MGSLVVRPVA QRLSGGGPEA SSGPLSPSSS LAEPGSGGQP IGWAPRKSAW 120 SLYRPTAGSL PLPQVPRPGN DPAPEPATAP PAAAVAAGGA GGSSPKPTQP PPASLPAQNS 180 LEMLHDAAVS AAEGFRAPRQ ESPGARAEAT PPEEEAAPRG EADPEEQDPD HRFFTGTRTL 240 FSFCCCSAGN AAGQQSKDAM ETLQAAASEL FRRFNESQAG EGTNQRQAST SAAAAEAAPL 300 GFGSRLPSMA GSSPTAAGSF LEAARAAGAA AAQSNPFTWI QPQLPLPASS SAEQQPPACQ 360 AASASAGAAG SERTGERMSK GWAEAAATLL GPVAQRMSLT SAFSEALASR GGQLQSMAVP 420 QSQAAGPSLA PRQHSAQADW TTARLGSAGS EPSFSLPLTA WRLSSGPEGL KLTGSLPISG 480 GADVFKAPGP LSVRAGTHNQ SSLIMPGTPS ISNMPSRSSL SPPLSPQHNQ DSGLSPLARQ 540 LEVCLARQVQ LQNAKRNAPA AAFMTEDPSS GVPVINPRLA GFSGPPLPWP HASQHSLDSQ 600 ISRTQIAQRV IDRADFFKVP GNLASFLKQA SLDTAMAALQ QREATPPTPH ARQLPSGAGA 660 IWPFGGGMVP PFGGGRPGGA PPPVQLDSPP QRLGTLTLQS PLIRSQLGSL AAEMPAQQRL 720 QASQQVFGDY GAAGSPPMGD AALADSLYAS VARQLQSGAG PAAFPQAQHQ SLQAAAEEAA 780 AAGSGFYRMD SGAALAAHGL GAGNLYGDLQ QQANMLELLG LLRAGLAGQG AAADAQPGSA 840 PKRKRHQGSP AAAGASRRGR EGNGEADASG APAAKRSANN KCEECGTTET PTWRRWGPTL 900 LCNACGLRRK KSPRSAAARQ LPLAAAAPPA GSGQPTWVAV PEPGSSAGQA AASAGLGSQQ 960 Q*

Sequence ? help Back to Top

Protein Sequence Length: 962 aa Download sequence Send to blast

MADEEPSSAP AAPTQAAAPS PEQPPVESPP QHSPSPSAGA EQPAAVAPQP ERNVSPSASD  60
AKAQGTPHER MGSLVVRPVA QRLSGGGPEA SSGPLSPSSS LAEPGSGGQP IGWAPRKSAW  120
SLYRPTAGSL PLPQVPRPGN DPAPEPATAP PAAAVAAGGA GGSSPKPTQP PPASLPAQNS  180
LEMLHDAAVS AAEGFRAPRQ ESPGARAEAT PPEEEAAPRG EADPEEQDPD HRFFTGTRTL  240
FSFCCCSAGN AAGQQSKDAM ETLQAAASEL FRRFNESQAG EGTNQRQAST SAAAAEAAPL  300
GFGSRLPSMA GSSPTAAGSF LEAARAAGAA AAQSNPFTWI QPQLPLPASS SAEQQPPACQ  360
AASASAGAAG SERTGERMSK GWAEAAATLL GPVAQRMSLT SAFSEALASR GGQLQSMAVP  420
QSQAAGPSLA PRQHSAQADW TTARLGSAGS EPSFSLPLTA WRLSSGPEGL KLTGSLPISG  480
GADVFKAPGP LSVRAGTHNQ SSLIMPGTPS ISNMPSRSSL SPPLSPQHNQ DSGLSPLARQ  540
LEVCLARQVQ LQNAKRNAPA AAFMTEDPSS GVPVINPRLA GFSGPPLPWP HASQHSLDSQ  600
ISRTQIAQRV IDRADFFKVP GNLASFLKQA SLDTAMAALQ QREATPPTPH ARQLPSGAGA  660
IWPFGGGMVP PFGGGRPGGA PPPVQLDSPP QRLGTLTLQS PLIRSQLGSL AAEMPAQQRL  720
QASQQVFGDY GAAGSPPMGD AALADSLYAS VARQLQSGAG PAAFPQAQHQ SLQAAAEEAA  780
AAGSGFYRMD SGAALAAHGL GAGNLYGDLQ QQANMLELLG LLRAGLAGQG AAADAQPGSA  840
PKRKRHQGSP AAAGASRRGR EGNGEADASG APAAKRSANN KCEECGTTET PTWRRWGPTL  900
LCNACGLRRK KSPRSAAARQ LPLAAAAPPA GSGQPTWVAV PEPGSSAGQA AASAGLGSQQ  960
Q*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005645230.1	0.0	hypothetical protein COCSUDRAFT_67181
TrEMBL	I0YQL7	0.0	I0YQL7_COCSC; Uncharacterized protein
STRING	XP_005645230.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17038961

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]