PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_120280
Common NameCOCSUDRAFT_66962
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bZIP
Protein Properties Length: 554aa    MW: 58317.3 Da    PI: 6.5987
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_120280genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.31.3e-07378435562
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                                kr+rr   NR++A rs  + k  +e L++kv+ L+   + L+ e+e+l+  + +  s+
  estExt_Genemark1.C_120280 378 KRARRILANRLSAARSKMKQKSHVEALRRKVEILTFHKSNLAAEIEKLRAACNRRASH 435
                                9************************************************999876665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.0E-8371430No hitNo description
SMARTSM003383.1E-7374438IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.335376426IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.29E-7378429No hitNo description
CDDcd147032.30E-16379430No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MPGTGGQEWQ GMNWRGWASE ADLRPPLQHW HSAPFNTLEG YRLEVDATRM GETCTAEPFD  60
PKTDYSRMDP LSQLQNAFLG GYDIGLTQEF SSQADMLNDL LRQRQFQSSP NMHAVPKFGA  120
EDSPDMLQQG TGAEAPGSDS LTQEEQVSSL TMAAFDECLL NVDLPALNIP RPGTVDDMDG  180
QSSPMSAHFQ TLQGLNLLPP PSAANMNRML LPCSPRNSPG TPQAAGEAGG GKSGPAAIQV  240
ATVGCGGALG KCPPGMPALP GQLLCPGPSR SQSLPVLHNN LNSSPGTPQA RGDTGALEQE  300
QCSALAANAA AQAALWSTSG TSKLTHPDTL NPGTGGVEEM EDVEAIHRAY LTPAHKRKGK  360
GGRQPAADPR LDPGIDPKRA RRILANRLSA ARSKMKQKSH VEALRRKVEI LTFHKSNLAA  420
EIEKLRAACN RRASHNSVLK MKLDELRGHC AMLVRTHNEL VEQRNRLLLA AGYSGRPGSA  480
TGGAEAAAHA HIGGAGSNNG ALDGCSVMPE TPEHEAAAAA AGSAPDLQLS GGSPITEVKG  540
GEHVNRSPET PSH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005646134.10.0hypothetical protein COCSUDRAFT_66962
TrEMBLI0YT710.0I0YT71_COCSC; Uncharacterized protein
STRINGXP_005646134.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP581722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.13e-12VIRE2-interacting protein 1
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]