PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_110100
Common NameCOCSUDRAFT_66702
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family Nin-like
Protein Properties Length: 728aa    MW: 77208.2 Da    PI: 6.1064
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_110100genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK73.92e-23357406352
                     RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                                k+++ledl+++F   +k+AA+ Lg+c+T+LKr+CR++GI+RWP+R++ +l
  estExt_Genemark1.C_110100 357 KRLRLEDLQSQFGVGLKEAANRLGICPTTLKRACRRHGIQRWPRRQLLKL 406
                                7899******************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.222334428IPR003035RWP-RK domain
PfamPF020423.4E-20359405IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0010118Biological Processstomatal movement
GO:0010167Biological Processresponse to nitrate
GO:0042128Biological Processnitrate assimilation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MVNTEVYDLP HSVEQRGAMA SRIARAVLNF QDQLLEADSN TGSLCQVWLP EVSEDGDVVL  60
RTKGLPFCVA GVGDLLALFR CISCRYCFGT DATKPDMLGA PGRVFTTQEP EMSRNVQKYS  120
KEVYLRASEA QQCRVHSTVV LPLFTSADRK SSLGVVEVVQ TRQDMSFAEI VSNLARSLED  180
CNLFTCEGLR GKEMAESSDA IKQMVKGGLV PSSSTRSNSS EADKAAATGD AENEGTSGLT  240
GRASTASISV DLADAASLEA ERKKSLGTRT RNASLAADLR AALRQQSLRD SAPKEALAAA  300
AAAPTAGAGA EQMSARGGSL SEEEVDMDED DDLEDETEEE RARRKGKGAG NPGKPGKRLR  360
LEDLQSQFGV GLKEAANRLG ICPTTLKRAC RRHGIQRWPR RQLLKLSRAI DQINATGSVK  420
SADGSSPAAN GLQPLPGPDT RWTALAQLIP GIAVQPDNRQ PHKTLPSTQA LALTHSTDQR  480
MLQRVDSSAS VDPYVAAAAA EQLQRYHSNG SLQQGSPVGA ASAGYGLPSH ASAQHLHRHD  540
SGAVAGADAL AGDGSVHRGQ AAFQYLAAAG PSVDAHMQQA QHYGSANSTP MPIPAGSAAH  600
LAHSYPGAMP VGTQPAMMPQ VFDGGQQISA PLSMPAMSLS HVHPPTGQHQ SPPMMVGGEG  660
SYRGQDLLSY SNQRTMIDAK MDEHTHNWMQ HAGNGAQHHL DLFPSVDDLD DDVGLVDAEV  720
LEMLLSR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00449DAPTransfer from AT4G24020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005646373.10.0hypothetical protein COCSUDRAFT_66702
TrEMBLI0YTW00.0I0YTW0_COCSC; Uncharacterized protein
STRINGXP_005646373.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP376056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.13e-20NIN like protein 7
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]