PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

estExt_Genemark1.C_10266

Common Name

COCSUDRAFT_64167

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

GATA

Protein Properties

Length: 337aa MW: 37403.8 Da PI: 8.9099

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
estExt_Genemark1.C_10266	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	46.7	4.5e-15	53	84	1	32
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C+ Cgt kTp+WR + dg+ktLCnaCG++ + estExt_Genemark1.C_10266 53 CVTCGTRKTPMWRTNTDGQKTLCNACGVRLHR 84 ***************************98755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	11.833	47	80	IPR000679	Zinc finger, GATA-type
SMART	SM00401	2.8E-9	47	98	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.05E-11	49	88	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.4E-13	51	88	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.52E-10	52	90	No hit	No description
PROSITE pattern	PS00344	0	53	78	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	4.1E-12	53	82	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MNAVRQNSQD CSAPGDNSPL PAVDLVRMQS ATMSACSSES RSTDTGSPGN KVCVTCGTRK 60 TPMWRTNTDG QKTLCNACGV RLHREQKKAK IARSGTDGTK AKSEPGVQLL PRSRSKSQNL 120 IPEAKVAVSG ESHTKLQRKR SWQESLEPRA VDFSGVREQQ SLYQMHSSSV QQRQQQQQQQ 180 ERARPVPWRS MSALSEQPGA QELCRLPQSL PMHYQSQMAM PSDADLDPLD PAFLASINDP 240 HSSRKDLFSY DLNATGSCLT EDRSEQTLLF NHPRYHQQRP AQPMKVQHYS SPTGDFRPGA 300 SYSMSPTGRS HIPLPLDMST PDSHSQMWMA QEGYFL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005651847.1	0.0	hypothetical protein COCSUDRAFT_64167
TrEMBL	I0Z9I4	0.0	I0Z9I4_COCSC; Uncharacterized protein
STRING	XP_005651847.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP220	14	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36620.1	5e-11	GATA transcription factor 19

Link Out ? help Back to Top
Entrez Gene	17045318

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]