PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_Genemark1.C_10169
Common NameCOCSUDRAFT_64119
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family E2F/DP
Protein Properties Length: 653aa    MW: 67951.3 Da    PI: 5.4713
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_Genemark1.C_10169genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP862.9e-27191273271
                   E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirw 69 
                               ++k+Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w
  estExt_Genemark1.C_10169 191 NGKGLRHFSMK---VCEKVESkGRTTYNEVADELVQEfsapslqagspggaayDEKNIRRRVYDALNVLMAMDIITK-DKKEISW 271
                               78*********...*****999*******************************************************.******* PP

                   E2F_TDP  70 kg 71 
                               +g
  estExt_Genemark1.C_10169 272 QG 273
                               98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-42187276IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.1E-33190273IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.7E-24192273IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.58E-20193274IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.32E-29278389IPR014889Transcription factor DP, C-terminal
SMARTSM011389.9E-14280426IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.49E-19281413No hitNo description
PfamPF087813.0E-20282403IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MDPGPSGLGG SLHDDLLRGF QDTGMYEYGV EYGIIQDGEI PEVQLRGDAA SSDAATMSAL  60
NPQQFGGASV SGCDRDAIVN GQRLVLAADA AIADALKVGE ATRLRMATDE HGAANGSEDA  120
DDPMQGTPPK QRKKRRVALA LADHPAHSPD LPALQPTDEQ GCDLLLLEQM SAARGMSSTG  180
SEGASVGGRN NGKGLRHFSM KVCEKVESKG RTTYNEVADE LVQEFSAPSL QAGSPGGAAY  240
DEKNIRRRVY DALNVLMAMD IITKDKKEIS WQGLPPAPAS TLERLKEQRV RLRAKLAQQH  300
AYLKETSKQH AAYRNLIVRN LDRPASALAS IAAPHGAAPT ALPLPFILIQ VNPEASVEIQ  360
IADDNRQAMF DFAGTCFRIM GDDEVLYEMN MHLGGEGAQQ QLTAPLQPAP RAPSPAVDSA  420
LSPAAAAIAA AAAARGPLPR LVPMGIASAT ALPPLAGGAP PSSMPGAGAL ASGLAALRGQ  480
AAALGVGQQL PPATWSRPEQ QLVSPDSARA MEEGTPPDSV KSAGGQNGRI PQTPQSGGSL  540
PGSIGGTMDL SPGGLLSAMT GVSSSQGSLM SPTPEMVGNA AQGWRWADPQ NSAGISHAST  600
STPTAPSTQH LQDLMQQMHA SRQEGMAGTY SQGFPIASLD ASGHPYMRQW HQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-35185279294PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005651746.10.0hypothetical protein COCSUDRAFT_64119
TrEMBLI0Z9830.0I0Z983_COCSC; Uncharacterized protein
STRINGXP_005651746.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-64Transcription factor DP
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]