PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.3.530.1 | ||||||||
Common Name | COCSUDRAFT_12896 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | MYB | ||||||||
Protein Properties | Length: 107aa MW: 11931.7 Da PI: 10.3738 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 9.8e-19 | 7 | 52 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEde l+++v ++G+++W++Ia + gR++k+c++rw + e_gw1.3.530.1 7 KGAWTPEEDEALKRLVLMHGPKNWSLIAGGIH-GRSGKSCRLRWCNQ 52 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.6e-16 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++++Ed +++a+ +G++ W+ Ia+ ++ gRt++ +k++w++ e_gw1.3.530.1 59 KDPFSEWEDAVIINAHIAHGNK-WAVIAKLLP-GRTDNGVKNHWNST 103 689*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.714 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-30 | 5 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-18 | 7 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 8 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.51E-13 | 9 | 51 | No hit | No description |
SMART | SM00717 | 2.2E-12 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.699 | 58 | 107 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.1E-14 | 59 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-22 | 61 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.05E-9 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MSGDAKKGAW TPEEDEALKR LVLMHGPKNW SLIAGGIHGR SGKSCRLRWC NQLDPGVIKD 60 PFSEWEDAVI INAHIAHGNK WAVIAKLLPG RTDNGVKNHW NSTLKRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-37 | 7 | 107 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 9e-37 | 7 | 107 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 9e-37 | 7 | 107 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}. | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00653 | PBM | Transfer from LOC_Os02g09480 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. | |||||
UniProt | INDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005650301.1 | 1e-73 | hypothetical protein COCSUDRAFT_12896, partial | ||||
Swissprot | O04192 | 8e-45 | MYB25_ARATH; Transcription factor MYB25 | ||||
Swissprot | Q9FDW1 | 5e-45 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | I0Z538 | 3e-72 | I0Z538_COCSC; Uncharacterized protein (Fragment) | ||||
STRING | XP_005650301.1 | 5e-73 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP15 | 16 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 3e-48 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Entrez Gene | 17043761 |