PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.2.667.1 | ||||||||
Common Name | COCSUDRAFT_12315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | MYB_related | ||||||||
Protein Properties | Length: 146aa MW: 15969.2 Da PI: 10.5142 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.8e-10 | 41 | 93 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-H..HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtl..kqcksrwqky 47 +WT+eE+ l++ + +++G+g+W++I+r + ++R++ q+ s+ qky e_gw1.2.667.1 41 PWTEEEHRLFLMGLAKFGKGDWRSISRSFVmlsmhgLTRCAffGQVASHAQKY 93 7**************************99988887777777444777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.604 | 34 | 98 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.23E-13 | 36 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-4 | 38 | 96 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.4E-12 | 38 | 96 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.9E-8 | 39 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.78E-8 | 41 | 69 | No hit | No description |
Pfam | PF00249 | 6.1E-8 | 41 | 93 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
QEDVRNIESG KVPLPKYLAS AEPASAAKSK ASEQERRKGI PWTEEEHRLF LMGLAKFGKG 60 DWRSISRSFV MLSMHGLTRC AFFGQVASHA QKYFIRLNSM NKKDKRRSSI HDITNPGGVS 120 GDVTGVLPSF ACSHSSYSPL LGGGR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005650853.1 | 1e-105 | hypothetical protein COCSUDRAFT_12315, partial | ||||
Swissprot | Q9FNN6 | 1e-38 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | I0Z6P0 | 1e-103 | I0Z6P0_COCSC; Uncharacterized protein (Fragment) | ||||
STRING | XP_005650853.1 | 1e-104 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP322 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-37 | MYB family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17044319 |
Publications ? help Back to Top | |||
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