PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.1.754.1
Common NameCOCSUDRAFT_11556
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family NF-YB
Protein Properties Length: 117aa    MW: 13246.1 Da    PI: 4.6962
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.1.754.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.42.9e-5515107193
          NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                    vreqdrflPian+srimkk+lPanaki+kdaketvqecvsefisf+tseasdkcqrekrktingddl+wa++ lGfe+y eplk+yl+kyre+
  e_gw1.1.754.1  15 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLVWAMGILGFEEYGEPLKLYLHKYREV 107
                    69*****************************************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.3E-5112106IPR009072Histone-fold
SuperFamilySSF471139.78E-3818107IPR009072Histone-fold
PfamPF008083.9E-282185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.0E-204967No hitNo description
PROSITE patternPS0068505268IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.0E-206886No hitNo description
PRINTSPR006153.0E-2087105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MDNDLDDGDE KGGNVREQDR FLPIANISRI MKKALPANAK IAKDAKETVQ ECVSEFISFI  60
TSEASDKCQR EKRKTINGDD LVWAMGILGF EEYGEPLKLY LHKYREVCFE ILLKDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4615106192Transcription factor HapC (Eurofung)
4g92_B1e-4615106192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005651963.11e-81CCAAT-binding transcription factor subunit A
SwissprotO233106e-59NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLI0Z9V03e-80I0Z9V0_COCSC; CCAAT-binding transcription factor subunit A
STRINGXP_005651963.16e-81(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20231616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-61nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]
  2. Han X, et al.
    Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis.
    J. Exp. Bot., 2013. 64(14): p. 4589-601
    [PMID:24006421]
  3. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  4. Hossain MA, et al.
    Identification of Novel Components of the Unfolded Protein Response in Arabidopsis.
    Front Plant Sci, 2016. 7: p. 650
    [PMID:27242851]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]