PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID e_gw1.1.548.1
Common NameCOCSUDRAFT_11147
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family ARR-B
Protein Properties Length: 303aa    MW: 34101.1 Da    PI: 7.065
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
e_gw1.1.548.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.58.2e-25227276151
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                    k+r++W+ e+H++Fv+av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQ
  e_gw1.1.548.1 227 KARVVWSVEMHQQFVQAVNQL-GIDKAVPKRILDLMNVDGLTRENVASHLQ 276
                    68*******************.***************************** PP

2Response_reg891.3e-29561641109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+pl +++++ +l++ +y +v+++ +g++ale+l+++   +Dl+l D+ mp+mdG++ll++i  e  +lp+i+++++ge + +l+ +  Ga
  e_gw1.1.548.1  56 VLVVDDDPLCLKVVEHMLRRCNY-QVTTCPNGKAALEKLRDRSvhFDLVLSDVYMPDMDGFKLLEHIGLEL-DLPVIMMSSNGETNVVLRGVTHGA 149
                    89*********************.***************999888**********************5544.6*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     dfl Kp+  eel++
  e_gw1.1.548.1 150 VDFLIKPVRVEELRN 164
                    ************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521727.83E-3953176IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.9E-4353184No hitNo description
SMARTSM004485.9E-3454166IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.27855170IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.0E-2656164IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.86E-3057169No hitNo description
Gene3DG3DSA:1.10.10.601.3E-24225276IPR009057Homeodomain-like
SuperFamilySSF466894.84E-16225277IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-22227277IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGLKARAASV SVHSSANNTA SPLSSGRRGF PHSGEMSGED LARSDSWEMF PAGLKVLVVD  60
DDPLCLKVVE HMLRRCNYQV TTCPNGKAAL EKLRDRSVHF DLVLSDVYMP DMDGFKLLEH  120
IGLELDLPVI MMSSNGETNV VLRGVTHGAV DFLIKPVRVE ELRNVWQHVV RRKRDQAVSQ  180
ARDSRDISDE EGTDDGKPRD KKRKEVILVL WWDMQRRDSD DGVSAKKARV VWSVEMHQQF  240
VQAVNQLGID KAVPKRILDL MNVDGLTREN VASHLQVPHL SIFSPLFAEL MSTLPRRCFY  300
DF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-18224276254ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005652114.10.0CheY-like protein
SwissprotQ9ZWJ91e-84ARR2_ARATH; Two-component response regulator ARR2
TrEMBLI0ZAA10.0I0ZAA1_COCSC; CheY-like protein
STRINGXP_005652114.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP12201516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-86response regulator 2
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]
  2. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  3. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  4. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  5. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  6. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  10. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]