PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | e_gw1.1.548.1 | ||||||||
Common Name | COCSUDRAFT_11147 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | ARR-B | ||||||||
Protein Properties | Length: 303aa MW: 34101.1 Da PI: 7.065 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 78.5 | 8.2e-25 | 227 | 276 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k+r++W+ e+H++Fv+av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQ e_gw1.1.548.1 227 KARVVWSVEMHQQFVQAVNQL-GIDKAVPKRILDLMNVDGLTRENVASHLQ 276 68*******************.***************************** PP | |||||||
2 | Response_reg | 89 | 1.3e-29 | 56 | 164 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 vl+vdD+pl +++++ +l++ +y +v+++ +g++ale+l+++ +Dl+l D+ mp+mdG++ll++i e +lp+i+++++ge + +l+ + Ga e_gw1.1.548.1 56 VLVVDDDPLCLKVVEHMLRRCNY-QVTTCPNGKAALEKLRDRSvhFDLVLSDVYMPDMDGFKLLEHIGLEL-DLPVIMMSSNGETNVVLRGVTHGA 149 89*********************.***************999888**********************5544.6*********************** PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 dfl Kp+ eel++ e_gw1.1.548.1 150 VDFLIKPVRVEELRN 164 ************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 7.83E-39 | 53 | 176 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.9E-43 | 53 | 184 | No hit | No description |
SMART | SM00448 | 5.9E-34 | 54 | 166 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.278 | 55 | 170 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.0E-26 | 56 | 164 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.86E-30 | 57 | 169 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 225 | 276 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-16 | 225 | 277 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-22 | 227 | 277 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGLKARAASV SVHSSANNTA SPLSSGRRGF PHSGEMSGED LARSDSWEMF PAGLKVLVVD 60 DDPLCLKVVE HMLRRCNYQV TTCPNGKAAL EKLRDRSVHF DLVLSDVYMP DMDGFKLLEH 120 IGLELDLPVI MMSSNGETNV VLRGVTHGAV DFLIKPVRVE ELRNVWQHVV RRKRDQAVSQ 180 ARDSRDISDE EGTDDGKPRD KKRKEVILVL WWDMQRRDSD DGVSAKKARV VWSVEMHQQF 240 VQAVNQLGID KAVPKRILDL MNVDGLTREN VASHLQVPHL SIFSPLFAEL MSTLPRRCFY 300 DF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-18 | 224 | 276 | 2 | 54 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005652114.1 | 0.0 | CheY-like protein | ||||
Swissprot | Q9ZWJ9 | 1e-84 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | I0ZAA1 | 0.0 | I0ZAA1_COCSC; CheY-like protein | ||||
STRING | XP_005652114.1 | 0.0 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP1220 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 2e-86 | response regulator 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 17045585 |