PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Genemark1.90_g | ||||||||
Common Name | COCSUDRAFT_55146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | bZIP | ||||||||
Protein Properties | Length: 235aa MW: 24665.4 Da PI: 4.7253 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23.6 | 1.1e-07 | 114 | 168 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 e ++ rrk+ NR +Arr R+RK e+e L++ v++L+++ ++L + +l e Genemark1.90_g 114 EERKKRRKEINRQSARRIRERKNNEMESLRQQVANLQQQQQMLLRYAAQLAREKN 168 567899*************************************999888877655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.3E-8 | 112 | 172 | No hit | No description |
SMART | SM00338 | 0.0013 | 112 | 176 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.898 | 114 | 177 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.04E-6 | 116 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDVARPGPPD AMLNEAVPSD GAGADMEALS LSHELLTQLA QLGAFPGNVN LDQFNGDPSA 60 TAAVLQAAGL GSADIPQQPF EPAGPSEQPG TSGDGGEGQD ERTVIKRKTP LNEEERKKRR 120 KEINRQSARR IRERKNNEME SLRQQVANLQ QQQQMLLRYA AQLAREKNAL VQRTLELTER 180 LNAVAAAGNP DARLPAFDGS SGFTAAAVAP VPAALGNSAD AAASDTAAVL GQPV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 120 | KRKTPLNEEERKKRRK |
2 | 115 | 121 | RKKRRKE |
3 | 116 | 120 | KKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005651666.1 | 1e-165 | hypothetical protein COCSUDRAFT_55146 | ||||
TrEMBL | I0Z903 | 1e-164 | I0Z903_COCSC; Uncharacterized protein | ||||
STRING | XP_005651666.1 | 1e-165 | (Coccomyxa subellipsoidea) |
Link Out ? help Back to Top | |
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Entrez Gene | 17045137 |
Publications ? help Back to Top | |||
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