PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.8632_g

Common Name

COCSUDRAFT_60316

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 475aa MW: 49934.6 Da PI: 6.0281

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.8632_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.2	3e-12	145	204	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +++ +rr++kNR A +sR+RK++e+ L++kv+ Lea N+ L++ l + ev l+++ Genemark1.8632_g 145 KVRLQRRLIKNRRTAAASRERKQQELLTLTTKVQGLEADNTGLRQALWQRDAEVRVLRAQ 204 5789****************************************9887776666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-10	137	206	No hit	No description
SMART	SM00338	2.5E-9	143	207	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.461	145	208	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-10	145	205	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.55E-7	147	205	No hit	No description
CDD	cd14812	6.48E-15	149	199	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MGEESMRTEQ LGLGGEREEP GSVFGRADLA PEGAADGQAT DCKKDYVEPA HASLHGPERL 60 HLSKEGVESQ AEQRLDGPIR PRRSTAGEAE RGLGQNRGAN DGSLNEVTEE PEASACESGE 120 SPRLYGGKRK SPEPDSSAVP EDSAKVRLQR RLIKNRRTAA ASRERKQQEL LTLTTKVQGL 180 EADNTGLRQA LWQRDAEVRV LRAQVHSMLR PPQPPLLPQP QPPGHGGYTG STVLRPGFPA 240 WPPPSAPMPF GQPPAGPGQA PRDDAGGPRQ GEPSGGPWLP EGQPLAPGPL AGSGGFAAPW 300 PSLLPDGWPR NESLGSSMLP GAAATEGPLA LGLQSLSASG LSSQGQFGVI RGLDGQYLRL 360 ASFSSQSGPR LPPIANLPWA DNQQLQARSS SCSALPGGPA VAPAGGAPEG QPLLRWRSGS 420 YPPDQQLHLP AHAHVRQLVS LGSSAPRNLP PLPHDVHGLD PLDFEGLPLW ADLE*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MGEESMRTEQ LGLGGEREEP GSVFGRADLA PEGAADGQAT DCKKDYVEPA HASLHGPERL  60
HLSKEGVESQ AEQRLDGPIR PRRSTAGEAE RGLGQNRGAN DGSLNEVTEE PEASACESGE  120
SPRLYGGKRK SPEPDSSAVP EDSAKVRLQR RLIKNRRTAA ASRERKQQEL LTLTTKVQGL  180
EADNTGLRQA LWQRDAEVRV LRAQVHSMLR PPQPPLLPQP QPPGHGGYTG STVLRPGFPA  240
WPPPSAPMPF GQPPAGPGQA PRDDAGGPRQ GEPSGGPWLP EGQPLAPGPL AGSGGFAAPW  300
PSLLPDGWPR NESLGSSMLP GAAATEGPLA LGLQSLSASG LSSQGQFGVI RGLDGQYLRL  360
ASFSSQSGPR LPPIANLPWA DNQQLQARSS SCSALPGGPA VAPAGGAPEG QPLLRWRSGS  420
YPPDQQLHLP AHAHVRQLVS LGSSAPRNLP PLPHDVHGLD PLDFEGLPLW ADLE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005642892.1	0.0	hypothetical protein COCSUDRAFT_60316
TrEMBL	I0YIX9	0.0	I0YIX9_COCSC; Uncharacterized protein
STRING	XP_005642892.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5773	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	6e-06	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	17036373

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]