PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Genemark1.8628_g | ||||||||
Common Name | COCSUDRAFT_60312 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 205aa MW: 22074 Da PI: 8.5087 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.2 | 2e-09 | 4 | 60 | 4 | 60 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++r r++ NRe+Arr R+R++ ++ ++k+ke+e+ N L ++l + + + +++ Genemark1.8628_g 4 RRRILRRIANRESARRVRARRLDLLDDMAQKAKEMEEANGWLLQRLASVESKHSAMV 60 6899***************************************99998887776665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.3E-5 | 1 | 65 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.99 | 3 | 66 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.0E-6 | 3 | 60 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.3E-8 | 5 | 57 | No hit | No description |
SuperFamily | SSF57959 | 6.47E-8 | 5 | 60 | No hit | No description |
CDD | cd14702 | 8.55E-11 | 6 | 57 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 9 | 23 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MFERRRILRR IANRESARRV RARRLDLLDD MAQKAKEMEE ANGWLLQRLA SVESKHSAMV 60 NEVQSLDADL RVKSAENEVL HGKVQQMRKS FTEADGQAIK AVLRSAPAQL TRGDASFPAA 120 AVRNGAELAP AQGVFSGVYS PGLMAAEESC ALLSSSSPAS GGLPGGTPFG FATAAPDLTM 180 PQIEPIDRSF SEFLKDEFAR NGGI* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_005642888.1 | 1e-146 | hypothetical protein COCSUDRAFT_60312 | ||||
TrEMBL | I0YIX5 | 1e-145 | I0YIX5_COCSC; Uncharacterized protein | ||||
STRING | XP_005642888.1 | 1e-146 | (Coccomyxa subellipsoidea) |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 17036369 |
Publications ? help Back to Top | |||
---|---|---|---|
|