PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.8412_g

Common Name

COCSUDRAFT_60096

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 448aa MW: 48818.3 Da PI: 6.5129

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.8412_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.4	2.7e-07	129	178	10	61
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +++NR Ar++R+R k++ L+++v+ Le+e a+k l +lk e++k + Genemark1.8412_g 129 MERNRRGARKFRERQKQKFMDLTNRVEMLETELIAMK--LCKLKMEADKTQV 178 79******************************97666..8888888877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57959	3.88E-5	125	164	No hit	No description
CDD	cd14686	2.34E-7	129	173	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.0E-6	129	167	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MVTMGTKMPF PEELELHSFL DLNLPVTDLD PFTAHTDWLN TLPSPNHSAD VSENSLNGSG 60 SSHYPFDDLF VTTDTFPVGS KHEIPAAESP ARIGLKKEAK SNSNASRGSA DGSAGTTPKP 120 KGHRTAAAME RNRRGARKFR ERQKQKFMDL TNRVEMLETE LIAMKLCKLK MEADKTQVEL 180 HAKQMEKTLS ALQAAHSSEE HQGDDAAEEL GSHAVTNGSD SVYISVPDSS PMPADMHTIK 240 GLSYTQAFGI YKSYVAALRQ CLSELEQDSA SQASLQRVGT LVHDLTVFAS RMQATSTVPL 300 WQLYHKQECC LDPTTSFEFE RDLLSTLDLG DDQRAALVAA QRRYRGALRA LAKERATINA 360 AMAAAAAPGK DGLKKAHEAM WALKGSLAKE PRYTEAFLSA CMRALMPLQT AKLIVAFFPR 420 TVWPDFSTIC ASIALDAGDN SVLDGPV*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MVTMGTKMPF PEELELHSFL DLNLPVTDLD PFTAHTDWLN TLPSPNHSAD VSENSLNGSG  60
SSHYPFDDLF VTTDTFPVGS KHEIPAAESP ARIGLKKEAK SNSNASRGSA DGSAGTTPKP  120
KGHRTAAAME RNRRGARKFR ERQKQKFMDL TNRVEMLETE LIAMKLCKLK MEADKTQVEL  180
HAKQMEKTLS ALQAAHSSEE HQGDDAAEEL GSHAVTNGSD SVYISVPDSS PMPADMHTIK  240
GLSYTQAFGI YKSYVAALRQ CLSELEQDSA SQASLQRVGT LVHDLTVFAS RMQATSTVPL  300
WQLYHKQECC LDPTTSFEFE RDLLSTLDLG DDQRAALVAA QRRYRGALRA LAKERATINA  360
AMAAAAAPGK DGLKKAHEAM WALKGSLAKE PRYTEAFLSA CMRALMPLQT AKLIVAFFPR  420
TVWPDFSTIC ASIALDAGDN SVLDGPV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005643340.1	0.0	hypothetical protein COCSUDRAFT_60096
TrEMBL	I0YK77	0.0	I0YK77_COCSC; Uncharacterized protein
STRING	XP_005643340.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17036725

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]