PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.7407_g

Common Name

COCSUDRAFT_58378

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

C2H2

Protein Properties

Length: 373aa MW: 40733.3 Da PI: 6.3369

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.7407_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00087	146	169	2	23
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 C+ C+k +++ +L +H+++ H Genemark1.7407_g 146 YCETCHKQYKSAAELDTHLSSydH 169 6*****************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	4.1E-10	45	91	IPR000467	G-patch domain
PROSITE profile	PS50174	14.767	47	93	IPR000467	G-patch domain
Pfam	PF01585	8.5E-10	48	80	IPR000467	G-patch domain
PROSITE pattern	PS00028	0	147	169	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MPYQREREEQ QLFGLDDDYS LPINHRADNT LETSDLVMAS VHTALGAENR GYQMLQRMGW 60 GGKGLGRNED GIAEPIKGGV EAGLRLGLGK AEEDSFYTAA ENVVRKRLEV EVQAEEDEAR 120 TRRREMAVER KQRIKEDTST AKRNLYCETC HKQYKSAAEL DTHLSSYDHH HKKVSLWRLI 180 EMKAMTAERT RSDRERKEKR RQEKEAAKLQ EQIERAHQAR MAAEGSAGGQ AASGPPGPAW 240 DPPPPPPEEQ PPPPPPDVPP PPPLPPSEPA PAGFSGFSFS QAAPRQPLAS RKDQEPVLQQ 300 QGAGAQLGSA PGVQMSVGRN EQQPMQFSMQ GRGVQPGRQT GAPGRGFSLS GGARKAAVAP 360 VAGFGLDSDD DE*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MPYQREREEQ QLFGLDDDYS LPINHRADNT LETSDLVMAS VHTALGAENR GYQMLQRMGW  60
GGKGLGRNED GIAEPIKGGV EAGLRLGLGK AEEDSFYTAA ENVVRKRLEV EVQAEEDEAR  120
TRRREMAVER KQRIKEDTST AKRNLYCETC HKQYKSAAEL DTHLSSYDHH HKKVSLWRLI  180
EMKAMTAERT RSDRERKEKR RQEKEAAKLQ EQIERAHQAR MAAEGSAGGQ AASGPPGPAW  240
DPPPPPPEEQ PPPPPPDVPP PPPLPPSEPA PAGFSGFSFS QAAPRQPLAS RKDQEPVLQQ  300
QGAGAQLGSA PGVQMSVGRN EQQPMQFSMQ GRGVQPGRQT GAPGRGFSLS GGARKAAVAP  360
VAGFGLDSDD DE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005644175.1	0.0	hypothetical protein COCSUDRAFT_58378
TrEMBL	I0YML2	0.0	I0YML2_COCSC; Uncharacterized protein
STRING	XP_005644175.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5642	6	6

Link Out ? help Back to Top
Entrez Gene	17037603

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]