PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.7279_g

Common Name

COCSUDRAFT_58250

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

CPP

Protein Properties

Length: 557aa MW: 57851.5 Da PI: 10.1628

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.7279_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.2	2.5e-16	187	226	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+gC+Ckks+C+kkYCeCf+ag+ C+ +CkC++C+N+ e Genemark1.7279_g 187 HKRGCHCKKSHCKKKYCECFQAGVNCGVHCKCDECHNTVE 226 799**********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	16.029	143	226	IPR005172	CRC domain
SMART	SM01114	4.6E-14	186	227	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.7E-12	188	224	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MEEDNSVISA IEPDMRADPQ QPVHTSTARG WETKFNAAGS GGRTWQYGQL KSPPDSGCPA 60 APFNSLQSVA AAATASLTSP ALKAVMAAGG RVDHRLQSAA AVAALSAAAA ATPVSRRLSS 120 TSSGQGDSVV PPTTPDDETK ARCAVASTSE DVVVSMRDQV RQRNPQAFQE KIEKQANGQG 180 SGVSGLHKRG CHCKKSHCKK KYCECFQAGV NCGVHCKCDE CHNTVEDGLP PPPRANGKQA 240 AAASATAPAA VTNPADRNKT SPGTPPAPGK ETTSLDARRT SSRSVKRKAW TSSAPAASEQ 300 PRRLPTPSTD SSASQHRAPS AGVLSPPDMV WPANTLAQAQ GHVLGSATSS GAQMLSPPAL 360 FDHSSVSRIL GRTALEQASQ QQLHGSMGGS DIARLLSTSL DGRRDGEGPD CAAQPGPSPQ 420 RDEQRKPSAQ PLLGQSSSMM LYTGQDPMQT DQASLKRGLW MGQQTGRKKT SHAPRTSQVR 480 KLTDVPRLAA GSRRGAPQRA ASLPAPQASI AGAQSALTRS HSSAEDTELL SPSAPSTFGQ 540 GQMLRMGAGR TLISPK*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MEEDNSVISA IEPDMRADPQ QPVHTSTARG WETKFNAAGS GGRTWQYGQL KSPPDSGCPA  60
APFNSLQSVA AAATASLTSP ALKAVMAAGG RVDHRLQSAA AVAALSAAAA ATPVSRRLSS  120
TSSGQGDSVV PPTTPDDETK ARCAVASTSE DVVVSMRDQV RQRNPQAFQE KIEKQANGQG  180
SGVSGLHKRG CHCKKSHCKK KYCECFQAGV NCGVHCKCDE CHNTVEDGLP PPPRANGKQA  240
AAASATAPAA VTNPADRNKT SPGTPPAPGK ETTSLDARRT SSRSVKRKAW TSSAPAASEQ  300
PRRLPTPSTD SSASQHRAPS AGVLSPPDMV WPANTLAQAQ GHVLGSATSS GAQMLSPPAL  360
FDHSSVSRIL GRTALEQASQ QQLHGSMGGS DIARLLSTSL DGRRDGEGPD CAAQPGPSPQ  420
RDEQRKPSAQ PLLGQSSSMM LYTGQDPMQT DQASLKRGLW MGQQTGRKKT SHAPRTSQVR  480
KLTDVPRLAA GSRRGAPQRA ASLPAPQASI AGAQSALTRS HSSAEDTELL SPSAPSTFGQ  540
GQMLRMGAGR TLISPK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005644569.1	0.0	hypothetical protein COCSUDRAFT_58250
TrEMBL	I0YNQ6	0.0	I0YNQ6_COCSC; Uncharacterized protein
STRING	XP_005644569.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17038017

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]