PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.7226_g

Common Name

COCSUDRAFT_58197

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

Nin-like

Protein Properties

Length: 223aa MW: 25246.7 Da PI: 11.1377

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.7226_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	47.3	3.9e-15	104	141	12	49
RWP-RK 12 kyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 yF+++i++A Lgv+ TvL r+ Rq+GI+RWP+R+ Genemark1.7226_g 104 GYFDMQIQEATARLGVGRTVLTRRVRQLGISRWPYRRR 141 49**********************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.856	76	164	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-13	104	143	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MPTIGTDILE WPGNELRGPP RPPPVVPWLQ WKTARTAKHS SEPRLDHINA ANPTSGSGSD 60 DSAAETDQQR VANRDRGGGV RKRLRPGPVP KLEAMTLQSF QEGGYFDMQI QEATARLGVG 120 RTVLTRRVRQ LGISRWPYRR RASMRKLIAK THHYLDQGEA RRQRQQPPTR SIVDLLHQEM 180 DPCKGARDAV LWDAIWRYRQ CFFKQEHLAK KAKPCKQGNS TG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005644505.1	1e-164	hypothetical protein COCSUDRAFT_58197
TrEMBL	I0YNJ2	1e-163	I0YNJ2_COCSC; Uncharacterized protein
STRING	XP_005644505.1	1e-164	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Link Out ? help Back to Top
Entrez Gene	17037935

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]