PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.6882_g
Common NameCOCSUDRAFT_57853
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family G2-like
Protein Properties Length: 403aa    MW: 43167.6 Da    PI: 6.9996
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.6882_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like45.71.4e-14239272135
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel 35 
                       +prl+Wt +LH++Fv+aveqL G ++A+Pkti+++
  Genemark1.6882_g 239 RPRLVWTAKLHQCFVQAVEQL-GLKNAVPKTIMQA 272
                       59*******************.9**********97 PP

2G2-like31.34.5e-102943153455
           G2-like  34 elmkvkgLtlehvkSHLQkYRl 55 
                        lm+v+gLt+e+v+SHLQkYRl
  Genemark1.6882_g 294 PLMHVDGLTRENVASHLQKYRL 315
                       58*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.32E-13237319IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-23238319IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-10240272IPR006447Myb domain, plants
TIGRFAMsTIGR015571.6E-7295316IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGTHEVSTEQ PRPSLQRPSS GPYGCWNQQG GFLQLPGLHE LTPLNSHLIS PVLAQAFGLP  60
PSNNDGRAPA AGAFNDQNNQ AQQQHPGQPN SGQFQPMQQQ AAQPQSVPFQ DMSRLMQTAG  120
YDAAQNRQSY GQQYPSSGQG YPPGMGMQQN GGANAGYPSF QHANLYGFNP ATTMANPYNL  180
SQYQGFGQQQ QQQQTAQPGW GDPQGMGATS SKRNQQEGPK ATSTGEDDAD ENQARALKRP  240
RLVWTAKLHQ CFVQAVEQLG LKNAVPKTIM QACFPTSATR LHPLSCPLQS VLAPLMHVDG  300
LTRENVASHL QKYRLQLKKE NKLDDEGNLI SGAGRDSGEP ASSFSHDEEP GTGKASTGAQ  360
GAVKDMETAA GNDMHIVPQL QLHSGSRDKA AELHTPRGSS PG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-19239318157Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005644671.10.0hypothetical protein COCSUDRAFT_57853
TrEMBLI0YP080.0I0YP08_COCSC; Uncharacterized protein
STRINGXP_005644671.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.23e-24G2-like family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]