PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Genemark1.6882_g | ||||||||
Common Name | COCSUDRAFT_57853 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 403aa MW: 43167.6 Da PI: 6.9996 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 45.7 | 1.4e-14 | 239 | 272 | 1 | 35 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilel 35 +prl+Wt +LH++Fv+aveqL G ++A+Pkti+++ Genemark1.6882_g 239 RPRLVWTAKLHQCFVQAVEQL-GLKNAVPKTIMQA 272 59*******************.9**********97 PP | |||||||
2 | G2-like | 31.3 | 4.5e-10 | 294 | 315 | 34 | 55 |
G2-like 34 elmkvkgLtlehvkSHLQkYRl 55 lm+v+gLt+e+v+SHLQkYRl Genemark1.6882_g 294 PLMHVDGLTRENVASHLQKYRL 315 58*******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.32E-13 | 237 | 319 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 238 | 319 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-10 | 240 | 272 | IPR006447 | Myb domain, plants |
TIGRFAMs | TIGR01557 | 1.6E-7 | 295 | 316 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 403 aa Download sequence Send to blast |
MGTHEVSTEQ PRPSLQRPSS GPYGCWNQQG GFLQLPGLHE LTPLNSHLIS PVLAQAFGLP 60 PSNNDGRAPA AGAFNDQNNQ AQQQHPGQPN SGQFQPMQQQ AAQPQSVPFQ DMSRLMQTAG 120 YDAAQNRQSY GQQYPSSGQG YPPGMGMQQN GGANAGYPSF QHANLYGFNP ATTMANPYNL 180 SQYQGFGQQQ QQQQTAQPGW GDPQGMGATS SKRNQQEGPK ATSTGEDDAD ENQARALKRP 240 RLVWTAKLHQ CFVQAVEQLG LKNAVPKTIM QACFPTSATR LHPLSCPLQS VLAPLMHVDG 300 LTRENVASHL QKYRLQLKKE NKLDDEGNLI SGAGRDSGEP ASSFSHDEEP GTGKASTGAQ 360 GAVKDMETAA GNDMHIVPQL QLHSGSRDKA AELHTPRGSS PG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-19 | 239 | 318 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_005644671.1 | 0.0 | hypothetical protein COCSUDRAFT_57853 | ||||
TrEMBL | I0YP08 | 0.0 | I0YP08_COCSC; Uncharacterized protein | ||||
STRING | XP_005644671.1 | 0.0 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP111 | 16 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G46640.2 | 3e-24 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 17038103 |
Publications ? help Back to Top | |||
---|---|---|---|
|