PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.6723_g

Common Name

COCSUDRAFT_57694

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 429aa MW: 48513.2 Da PI: 9.0132

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.6723_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.2	1.7e-08	100	151	6	57
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 +e +++N+ A+rr+RqR k +ieeL++k +L++++++L ++ +l + Genemark1.6723_g 100 KEVLAERNKQAQRRFRQRQKDKIEELQNKLTALQSQRTQLTSRSHMLATARQ 151 678899************************************9999887666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.8E-5	105	147	No hit	No description
SuperFamily	SSF57959	1.97E-5	105	155	No hit	No description
PROSITE profile	PS50217	8.806	105	160	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MGEPSPSHQQ GLEGLWSATQ NQGMPRTNPD RSIPYGYDPT SGHIPIPVPG YRQQGPHLVT 60 PTESPQSSED RTQEGPAVKR SSSMQANSGS PSNQGSKSFK EVLAERNKQA QRRFRQRQKD 120 KIEELQNKLT ALQSQRTQLT SRSHMLATAR QLRKEELRKL RERQAAAVDA DEEDLAREFS 180 GAVRLTVHEQ REVTLSPDQI KQMTEKDLAR LWSQYVKELA VLLVLAEGPQ PPPEVVERMQ 240 ELVQRELLLL YIRAALTNMS SVKRFVANYK VEEMRMHLGD EGVGMWRTVA LALQLSPEQS 300 DSTTKLWRSF RTKLAELFAS RQTCHAGIAD SMPSGVMGQD FAVQYLRACE QMDTLKKNLR 360 QEHVLIHDFL STFYTQTLTP LQMARCVVRS FPWYPDIPAI TTWMAAQHGD PEAQGLLKSL 420 MPNVKVEL*

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MGEPSPSHQQ GLEGLWSATQ NQGMPRTNPD RSIPYGYDPT SGHIPIPVPG YRQQGPHLVT  60
PTESPQSSED RTQEGPAVKR SSSMQANSGS PSNQGSKSFK EVLAERNKQA QRRFRQRQKD  120
KIEELQNKLT ALQSQRTQLT SRSHMLATAR QLRKEELRKL RERQAAAVDA DEEDLAREFS  180
GAVRLTVHEQ REVTLSPDQI KQMTEKDLAR LWSQYVKELA VLLVLAEGPQ PPPEVVERMQ  240
ELVQRELLLL YIRAALTNMS SVKRFVANYK VEEMRMHLGD EGVGMWRTVA LALQLSPEQS  300
DSTTKLWRSF RTKLAELFAS RQTCHAGIAD SMPSGVMGQD FAVQYLRACE QMDTLKKNLR  360
QEHVLIHDFL STFYTQTLTP LQMARCVVRS FPWYPDIPAI TTWMAAQHGD PEAQGLLKSL  420
MPNVKVEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005645092.1	0.0	hypothetical protein COCSUDRAFT_57694
TrEMBL	I0YQ79	0.0	I0YQ79_COCSC; Uncharacterized protein
STRING	XP_005645092.1	0.0	(Coccomyxa subellipsoidea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3867	4	4

Link Out ? help Back to Top
Entrez Gene	17038524

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]