PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.6443_g

Common Name

COCSUDRAFT_57414

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 359aa MW: 40630.3 Da PI: 6.987

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.6443_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.3	1.2e-06	23	78	6	61
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 +e+ +++NR AA r+RqR k ++ e+e+ ++ L+a+ a ke ++++ ++ ++++ Genemark1.6443_g 23 KEIVREQNRKAAARFRQRQKDKLREYEKQIQDLTAKLNAAEKEKSTYELKCGEMEK 78 67779******************************999999999999998888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd14686	7.34E-6	23	70	No hit	No description
SuperFamily	SSF57959	7.07E-5	23	70	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.9E-5	24	77	No hit	No description
PROSITE pattern	PS00036	0	27	40	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MTSRESFKFE QNGSKQQHSL TTKEIVREQN RKAAARFRQR QKDKLREYEK QIQDLTAKLN 60 AAEKEKSTYE LKCGEMEKAM QPGETHDELA KREALAEALT RFCSVVRKGQ ARSIDEHELL 120 TASGKLSMQH ILPIYNECAQ ELARCLADGG ERKGTEAYLR IQEIISARRN LFHLMGWLDA 180 QLFRRAAAMR YGGASDAEPY TDPGKDHWRK VVEASSYTPE QKQGLLTAQN VLFARMHEIL 240 EAREAIMNTL QANFPCAETE HKNAPLYVQA CKAADDLKAN LEEEYVAVRE FIVEFCRCMD 300 FVQHAKMLVA GYPYTPDVLA ITGILREEAG APQNIKKEIL LESLPEASPF RNLSSALA*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MTSRESFKFE QNGSKQQHSL TTKEIVREQN RKAAARFRQR QKDKLREYEK QIQDLTAKLN  60
AAEKEKSTYE LKCGEMEKAM QPGETHDELA KREALAEALT RFCSVVRKGQ ARSIDEHELL  120
TASGKLSMQH ILPIYNECAQ ELARCLADGG ERKGTEAYLR IQEIISARRN LFHLMGWLDA  180
QLFRRAAAMR YGGASDAEPY TDPGKDHWRK VVEASSYTPE QKQGLLTAQN VLFARMHEIL  240
EAREAIMNTL QANFPCAETE HKNAPLYVQA CKAADDLKAN LEEEYVAVRE FIVEFCRCMD  300
FVQHAKMLVA GYPYTPDVLA ITGILREEAG APQNIKKEIL LESLPEASPF RNLSSALA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005645411.1	0.0	hypothetical protein COCSUDRAFT_57414
TrEMBL	I0YR48	0.0	I0YR48_COCSC; Uncharacterized protein
STRING	XP_005645411.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17038846

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]