PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Genemark1.6261_g

Common Name

COCSUDRAFT_57232

Organism

Coccomyxa subellipsoidea C-169

Taxonomic ID

574566

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea

Family

bZIP

Protein Properties

Length: 385aa MW: 41807.9 Da PI: 7.3433

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Genemark1.6261_g	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.8	4.1e-12	173	228	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 e++r +r++ NRe+Arr R+R++ iee + k++e+e+ N++L++ + + + a+ Genemark1.6261_g 173 ERRRIKRRIANRESARRVRARRQDLIEEMAVKADEMEKHNSTLASHATAVETQHAA 228 789******************************************99888877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-7	171	235	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.6E-8	173	229	No hit	No description
PROSITE profile	PS50217	9.645	173	236	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-9	173	229	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.53E-8	175	232	No hit	No description
CDD	cd14702	8.38E-14	176	227	No hit	No description
PROSITE pattern	PS00036	0	178	193	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MAFLRDAEDF LARLPSISLD GMDPLFPQGD PALAKSQYAE VVPTKVNMAA QKCTITTGPQ 60 PFPPFDPSAK QGRSKSTATH YSPNTTLYPM SYLESFSGAE GGDHTGGEHE ESLQARHSSL 120 QSCSSDAAEE WNLRRSPRNS NSPKNKGPRE KRKVGRPIAY CGDPDSPDLT PAERRRIKRR 180 IANRESARRV RARRQDLIEE MAVKADEMEK HNSTLASHAT AVETQHAAMM RQMGEYSSRL 240 QATAAQNKAL QREIAHLRHL LENKGEVMLP KEDHACPSSC SQSAQQPVNH STACNYPGAR 300 ASGAADTTLG AGPVFSNGMR SAFAVSADLP AEEPHQVTDL PMCSAASMDQ LLPNMGLTPS 360 MAFPWETGFS VGKAPSFALP IEMF*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MAFLRDAEDF LARLPSISLD GMDPLFPQGD PALAKSQYAE VVPTKVNMAA QKCTITTGPQ  60
PFPPFDPSAK QGRSKSTATH YSPNTTLYPM SYLESFSGAE GGDHTGGEHE ESLQARHSSL  120
QSCSSDAAEE WNLRRSPRNS NSPKNKGPRE KRKVGRPIAY CGDPDSPDLT PAERRRIKRR  180
IANRESARRV RARRQDLIEE MAVKADEMEK HNSTLASHAT AVETQHAAMM RQMGEYSSRL  240
QATAAQNKAL QREIAHLRHL LENKGEVMLP KEDHACPSSC SQSAQQPVNH STACNYPGAR  300
ASGAADTTLG AGPVFSNGMR SAFAVSADLP AEEPHQVTDL PMCSAASMDQ LLPNMGLTPS  360
MAFPWETGFS VGKAPSFALP IEMF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005645208.1	0.0	hypothetical protein COCSUDRAFT_57232
TrEMBL	I0YQJ5	0.0	I0YQJ5_COCSC; Uncharacterized protein
STRING	XP_005645208.1	0.0	(Coccomyxa subellipsoidea)

Link Out ? help Back to Top
Entrez Gene	17038643

Publications ? help Back to Top
Blanc G, et al. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol., 2012. 13(5): p. R39 [PMID:22630137]