PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.5722_g
Common NameCOCSUDRAFT_56693
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bZIP
Protein Properties Length: 193aa    MW: 21489.1 Da    PI: 10.6173
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.5722_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.28.3e-09116152137
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvke 37 
                       eke kr rr+ +NR++A+  R+RKk ++ +Le  +k+
  Genemark1.5722_g 116 EKEAKRLRRLLRNRVSAQQARERKKSYVSNLEAQAKQ 152
                       89******************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-10116180IPR004827Basic-leucine zipper domain
PfamPF001704.4E-7116152IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.001118181IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-11120178No hitNo description
Gene3DG3DSA:1.20.5.1703.9E-14120178No hitNo description
PROSITE patternPS000360123138IPR004827Basic-leucine zipper domain
CDDcd147042.59E-9129171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSFEGPHKFD ASHFVGAFQK PEGIPMPSRM DQNIVPQQPG GIPHRLNGIE KQELELARRR  60
AEKAAEGKRA NAAAARARRR ASRPRLEERT GGDDEGDASQ GEEDDLEAKL AATKDEKEAK  120
RLRRLLRNRV SAQQARERKK SYVSNLEAQA KQSDQLVAKL QQEVKTLERE NVMLRQVIRN  180
MQGGGAKVSD AN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005646023.11e-136hypothetical protein COCSUDRAFT_56693
TrEMBLI0YSW01e-134I0YSW0_COCSC; Uncharacterized protein
STRINGXP_005646023.11e-135(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP46161010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-11bZIP family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]