PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.5641_g
Common NameCOCSUDRAFT_56612
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bHLH
Protein Properties Length: 456aa    MW: 48326.6 Da    PI: 5.0686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.5641_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12226286253
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC............TTS-STCHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkas.........kapskKlsKaeiLekAveYIks 53 
                        ++h+ +E++RRdriNs ++eLr+l+P++          + + +K  K  +L  ++  +ks
  Genemark1.5641_g 226 HTSHSTVEKNRRDRINSLIDELRDLVPPQQkesantsqdNLDPTKRPKHVVLSDTILLVKS 286
                       689*************************755777777766666666666666666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-11219296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.427224287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-12225292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9226285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-8227292No hitNo description
SMARTSM003533.1E-7230293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.07E-7365423No hitNo description
CDDcd048731.84E-4368428No hitNo description
Gene3DG3DSA:3.30.70.2601.5E-4368422No hitNo description
PROSITE profilePS516719.331369448IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEVSPPNVAE ALANDSLFDY VFSKSELDDV LQFMERQQDE PVANHSSNVF LGNAPPASVS  60
LQFQPHPSGG FSGNPFTSLG LDQGLNGAQP YLSQIESDPF SSQAMGQPDS LGFDLGMQLD  120
PELNPLHQGN ISLGPQSRIK AEPMCGLEPA GLRSPLEGSA SPSPNHAGSL GPADSLPSAA  180
GAPLKSEAQP LSAAFAKLGS GGLTSPAGRP RQFSSELHPG SGTKQHTSHS TVEKNRRDRI  240
NSLIDELRDL VPPQQKESAN TSQDNLDPTK RPKHVVLSDT ILLVKSLADK VHATEKALAR  300
AQSGGGKEDS QHSQENGAQD LLRRSLPEGT AFNSDTASSS GPSQDLPSVP KGAPMSSGVV  360
VERSNGCLLV KVNCKDRRGL LADVISALKS FPLEITTAAV TTTADGFVCD VFQVKAPSGQ  420
EYSEEEIQCH VHFALYPSST REPQLGDKRQ RMRDE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446452DKRQRMR
2447452KRQRMR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005645936.10.0hypothetical protein COCSUDRAFT_56612
TrEMBLI0YSM30.0I0YSM3_COCSC; Uncharacterized protein
STRINGXP_005645936.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34551013
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]