PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Genemark1.5498_g | ||||||||
Common Name | COCSUDRAFT_56469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
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Family | bZIP | ||||||||
Protein Properties | Length: 807aa MW: 84911.2 Da PI: 7.0405 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 20.4 | 1.1e-06 | 190 | 239 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 kr++r++ NR +A+rs +RK+ i +Lee+v++ ++ + + ++ +l++ Genemark1.5498_g 190 KRAKRLIANRQSAQRSKARKLRHIMQLEEEVQTVQGISAQQQATIGSLQQ 239 9******************************9877655555555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-9 | 186 | 250 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 5.1E-5 | 188 | 223 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.898 | 188 | 251 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.24E-8 | 190 | 244 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-6 | 190 | 224 | No hit | No description |
CDD | cd14703 | 1.45E-16 | 191 | 240 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 807 aa Download sequence Send to blast |
MEEPPSSSAP PGPPARAPSP SMLSIYLQRT ASGRLTSAAP QPRQDPPAQP SSGDPSPRQL 60 PPQPPLQQHQ GVILSSPFYT QQREGFLLSS SSIPISQRSS SQPALSQSST DPLPGGQPSR 120 QPTGTAAFSP SRSSFGSGYS LQSGGGDDTG AAESHNPGGG GGLGQPPGGY AYGAAFPGVS 180 DEDLAAMDPK RAKRLIANRQ SAQRSKARKL RHIMQLEEEV QTVQGISAQQ QATIGSLQQE 240 AVLLTASNRQ LSVQVADLQD QLHRQEAFTE LVTAELRRLS ALAGEPAQLP TFSPAALQEQ 300 QQLQAQQLMP GGQLPPQLSD IALQQQLASQ YGLPGFAGTA PSLRNRPVEL CSGFQQYPVG 360 VQQFQPAYVP QFPMAQLPAM QPVPQQRGGL LMEPPPPGGA YYQPLPQQQR QSRQRQQHPR 420 RQPPPPQPPT QPPPQLDGGR QPAPERPSVA MQGAATPREQ NTLASHPSLE RPASAPLPAA 480 VADAAAAAAA ESSAAEGTRA TAGPTSTEAV RDAAIAALAL AERRSVRFSA DLPGSEAAAE 540 SRRQALATAG RGNTFPLARE DAAARRAAVR TLSAPVPSAA GSGAGSGGAP ARVAAEAAGP 600 AAAAQPDPFR VSVPASAFQI EERRSAQDTP SWRQQQQQVQ HFPSVPEAED VQSWQQPPQV 660 GWPLGSRAQQ PYPVAGGPVG NVMQAFRGLS MQGSDPAALP PSGSGQQRGS LHQPFSMQPG 720 GHYGNLSWDE MMRSLSDPVF QTGQDGAPII PPGLYSQGME GMGMAGRPPF ESFYNVEQTD 780 PAQQQQQQQQ PPQQEQLRGD EGSRQR* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_005646580.1 | 0.0 | hypothetical protein COCSUDRAFT_56469 | ||||
TrEMBL | I0YUG7 | 0.0 | I0YUG7_COCSC; Uncharacterized protein | ||||
STRING | XP_005646580.1 | 0.0 | (Coccomyxa subellipsoidea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP6785 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31370.5 | 8e-19 | bZIP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 17040088 |
Publications ? help Back to Top | |||
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