PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.5498_g
Common NameCOCSUDRAFT_56469
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bZIP
Protein Properties Length: 807aa    MW: 84911.2 Da    PI: 7.0405
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.5498_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.41.1e-06190239554
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                       kr++r++ NR +A+rs +RK+  i +Lee+v++ ++   + + ++ +l++
  Genemark1.5498_g 190 KRAKRLIANRQSAQRSKARKLRHIMQLEEEVQTVQGISAQQQATIGSLQQ 239
                       9******************************9877655555555555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-9186250IPR004827Basic-leucine zipper domain
PfamPF077165.1E-5188223IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.898188251IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.24E-8190244No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-6190224No hitNo description
CDDcd147031.45E-16191240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MEEPPSSSAP PGPPARAPSP SMLSIYLQRT ASGRLTSAAP QPRQDPPAQP SSGDPSPRQL  60
PPQPPLQQHQ GVILSSPFYT QQREGFLLSS SSIPISQRSS SQPALSQSST DPLPGGQPSR  120
QPTGTAAFSP SRSSFGSGYS LQSGGGDDTG AAESHNPGGG GGLGQPPGGY AYGAAFPGVS  180
DEDLAAMDPK RAKRLIANRQ SAQRSKARKL RHIMQLEEEV QTVQGISAQQ QATIGSLQQE  240
AVLLTASNRQ LSVQVADLQD QLHRQEAFTE LVTAELRRLS ALAGEPAQLP TFSPAALQEQ  300
QQLQAQQLMP GGQLPPQLSD IALQQQLASQ YGLPGFAGTA PSLRNRPVEL CSGFQQYPVG  360
VQQFQPAYVP QFPMAQLPAM QPVPQQRGGL LMEPPPPGGA YYQPLPQQQR QSRQRQQHPR  420
RQPPPPQPPT QPPPQLDGGR QPAPERPSVA MQGAATPREQ NTLASHPSLE RPASAPLPAA  480
VADAAAAAAA ESSAAEGTRA TAGPTSTEAV RDAAIAALAL AERRSVRFSA DLPGSEAAAE  540
SRRQALATAG RGNTFPLARE DAAARRAAVR TLSAPVPSAA GSGAGSGGAP ARVAAEAAGP  600
AAAAQPDPFR VSVPASAFQI EERRSAQDTP SWRQQQQQVQ HFPSVPEAED VQSWQQPPQV  660
GWPLGSRAQQ PYPVAGGPVG NVMQAFRGLS MQGSDPAALP PSGSGQQRGS LHQPFSMQPG  720
GHYGNLSWDE MMRSLSDPVF QTGQDGAPII PPGLYSQGME GMGMAGRPPF ESFYNVEQTD  780
PAQQQQQQQQ PPQQEQLRGD EGSRQR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005646580.10.0hypothetical protein COCSUDRAFT_56469
TrEMBLI0YUG70.0I0YUG7_COCSC; Uncharacterized protein
STRINGXP_005646580.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP678544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31370.58e-19bZIP family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]