PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Genemark1.5055_g
Common NameCOCSUDRAFT_56026
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family bZIP
Protein Properties Length: 299aa    MW: 30679.8 Da    PI: 6.1353
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Genemark1.5055_ggenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_159.19.2e-19225277153
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                       e+e+kr+rrkq+NRe+ArrsR+RK+ae+e L +kv  Le+eN +Lk+++  l+
  Genemark1.5055_g 225 EREVKRQRRKQSNRESARRSRLRKQAECEGLGQKVLDLETENAKLKETVTILQ 277
                       799*******************************************9987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-17220281No hitNo description
SMARTSM003387.1E-18225289IPR004827Basic-leucine zipper domain
PfamPF001703.6E-17225278IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.381227281IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-11228280No hitNo description
CDDcd147021.16E-20230281No hitNo description
PROSITE patternPS000360232247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDDAEGQSAV PASSGAPAAS GAPDALQWTQ AVQQWQAQAQ AMQGGQQRKN GAQAAPPFYP  60
LGAAHPYSLY QPLMAYPPFY NMPFPYPPAA SAAQVPSEHA AGASVAEKKP GDTNGQSKSG  120
DDSSNPNSNA EGEQPARTAS GGVKPELHAQ SQPDAAPYQG LVPTDATVNS TAALAALAAA  180
QAAAASGPDA VEFWRQRAGQ LAGSGVDLTQ LAASAAGQAH VVQDEREVKR QRRKQSNRES  240
ARRSRLRKQA ECEGLGQKVL DLETENAKLK ETVTILQAQL DAALGKTAAA APAAAPVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241247RRSRLRK
2241248RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005646877.10.0hypothetical protein COCSUDRAFT_56026
TrEMBLI0YVB40.0I0YVB4_COCSC; Uncharacterized protein
STRINGXP_005646877.10.0(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4426911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.23e-17G-box binding factor 1
Publications ? help Back to Top
  1. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]